Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7D_RS02000 Genome accession   NZ_OZ217345
Coordinates   380338..382326 (+) Length   662 a.a.
NCBI ID   WP_173233269.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 375338..387326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS01985 (SMIF22_03810) - 375729..376562 (+) 834 WP_112445791.1 carbohydrate ABC transporter permease -
  ACLV7D_RS01990 (SMIF22_03820) gtfA 376882..378324 (+) 1443 WP_112445793.1 sucrose phosphorylase -
  ACLV7D_RS01995 (SMIF22_03830) - 378462..379655 (+) 1194 WP_173233271.1 O-antigen ligase family protein -
  ACLV7D_RS02000 (SMIF22_03840) amiA3 380338..382326 (+) 1989 WP_173233269.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7D_RS02005 (SMIF22_03850) amiC 382393..383889 (+) 1497 WP_112443790.1 ABC transporter permease Regulator
  ACLV7D_RS02010 (SMIF22_03860) amiD 383889..384815 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7D_RS02015 (SMIF22_03870) amiE 384824..385891 (+) 1068 WP_218764302.1 ABC transporter ATP-binding protein Regulator
  ACLV7D_RS02020 (SMIF22_03880) amiF 385902..386828 (+) 927 WP_001291301.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72617.90 Da        Isoelectric Point: 4.8860

>NTDB_id=1170351 ACLV7D_RS02000 WP_173233269.1 380338..382326(+) (amiA3) [Streptococcus mitis isolate S. mitis F22]
MKKSQVLAVAGATLLASGVLAACSNTSSNNAKLAKDYQYVYQTDPETLDYIVSNIDSTSFITTNAVDGLLANDKYGNLVP
SIAESWTVSKDGLTYTYKIRKDAKWVTAEGEEYAPVTAKDFVTGLKHAVDGKSKGLSIVSSSIKGLEAYIKGETSDFSTV
GVKALDDQTLEYTLNQPETFWNDKTTSGVLMPVNEEFLASKGEGFGSPTDANSILYNGPFVLKAVTPKSSIEMAKNDAYW
DKENVKIENVKFTFWDGKDQDVIAKGFSDGQYSKARIFPTSSTYEKYAADFKDNIYFNEPGAGVATVSLNYGRTTYNHTA
KTSDAQKTSTQKALLNKEFRQALNFAVDRNSYSAQTNGTDGAAVAIRNTFAPYNLQVGKKTFGELVQDSLAKTNSSTWSN
VSLADSQNGLYNEEKAKEVFAKAKSSLQAEGVEFPIHLDALVIQESTAVVNRVQSLKQSIEKVLGSDNVVVDLQQMTQAE
ALPISFSAPTAKEQDWDIHTLLGWNPDYQDPSTFLDQFVIKGGNTRLYLGIDQNTDASVVSKLALADYGKLLDDANSENQ
DVQKRYEKYAVAQAWLTDNALTIPVMASPKETAVSYVSKVLPFSSSYSESGLKGENSGYLKYTEVSEKAITKEEYEKARE
KWLKEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=1170351 ACLV7D_RS02000 WP_173233269.1 380338..382326(+) (amiA3) [Streptococcus mitis isolate S. mitis F22]
ATGAAAAAAAGTCAAGTGCTTGCTGTAGCAGGAGCTACCTTATTAGCGTCAGGAGTTCTAGCTGCGTGTTCAAACACTAG
TTCAAATAATGCGAAACTAGCAAAAGATTACCAATATGTTTATCAAACAGATCCAGAAACCTTGGATTATATCGTCAGCA
ATATCGATTCAACATCATTCATCACAACAAATGCTGTAGATGGTTTGTTGGCTAACGATAAATATGGTAATCTGGTTCCT
TCTATTGCTGAATCATGGACAGTTTCAAAAGATGGTTTGACGTATACCTATAAAATCCGTAAGGATGCTAAATGGGTGAC
AGCAGAGGGAGAAGAGTACGCTCCTGTCACTGCTAAAGACTTCGTTACTGGTTTGAAACATGCGGTAGATGGGAAATCAA
AAGGACTTTCAATCGTTAGCTCTTCTATTAAGGGATTAGAAGCATATATTAAGGGTGAAACAAGCGATTTTTCAACCGTC
GGAGTAAAAGCACTCGATGACCAAACACTAGAGTATACCTTGAACCAGCCAGAAACTTTCTGGAATGACAAGACAACTAG
TGGTGTTTTGATGCCAGTTAATGAAGAATTCTTAGCTTCAAAAGGGGAAGGTTTTGGTTCTCCAACAGATGCTAACTCTA
TTCTTTATAACGGTCCATTTGTCTTGAAGGCTGTAACTCCTAAATCATCTATCGAGATGGCTAAAAATGATGCTTACTGG
GACAAAGAAAATGTAAAAATTGAGAACGTTAAGTTCACTTTCTGGGATGGTAAGGATCAAGATGTAATTGCCAAAGGTTT
TTCTGATGGTCAATATAGCAAGGCTCGTATCTTCCCTACAAGTTCTACATATGAAAAATATGCAGCTGACTTCAAAGATA
ACATTTACTTTAATGAACCAGGTGCGGGTGTTGCAACTGTCAGCTTGAACTATGGCCGTACAACTTATAACCACACTGCC
AAAACAAGTGATGCCCAAAAGACATCTACTCAAAAAGCTTTGCTAAATAAGGAGTTCCGTCAAGCCTTGAACTTTGCGGT
CGATCGCAATTCTTACTCAGCTCAAACAAATGGTACTGATGGAGCTGCAGTAGCCATCCGTAATACATTCGCACCATATA
ATCTTCAAGTTGGTAAGAAAACATTTGGTGAATTGGTACAAGATAGCTTGGCTAAGACAAATTCTTCTACTTGGTCAAAC
GTATCTCTAGCAGATTCTCAAAATGGACTTTACAATGAAGAAAAAGCGAAAGAAGTCTTTGCTAAAGCTAAATCAAGCCT
ACAAGCTGAAGGTGTTGAATTCCCAATCCACTTGGATGCCTTGGTTATCCAAGAATCAACAGCGGTTGTAAACCGTGTTC
AATCATTGAAACAATCAATTGAAAAAGTATTGGGTTCAGATAATGTTGTTGTAGACTTGCAACAAATGACTCAAGCAGAA
GCTTTACCAATTTCATTTAGTGCTCCAACAGCTAAAGAGCAAGATTGGGATATCCACACCTTGCTAGGATGGAACCCTGA
CTATCAAGATCCTTCTACTTTCTTGGATCAGTTTGTCATCAAGGGAGGAAACACTCGCCTTTACCTTGGTATTGACCAAA
ACACGGATGCATCAGTAGTAAGCAAACTTGCTTTAGCTGACTATGGAAAATTACTTGATGATGCAAATAGCGAAAACCAA
GATGTTCAAAAACGTTATGAAAAATACGCGGTAGCACAAGCTTGGTTGACTGACAATGCTTTGACAATTCCAGTAATGGC
TTCTCCTAAAGAAACAGCCGTTTCATATGTTTCAAAAGTTCTACCATTTAGCTCATCATATTCTGAATCTGGTCTTAAAG
GTGAAAATTCAGGATACTTGAAGTACACTGAAGTTAGTGAAAAAGCAATCACCAAAGAAGAGTATGAAAAAGCTCGTGAA
AAATGGTTGAAAGAAAAAGCTGAATCAAACGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.518

100

0.547
  amiA3 Streptococcus thermophilus LMG 18311

54.217

100

0.544
  amiA Streptococcus salivarius strain HSISS4

53.765

100

0.539

Multiple sequence alignment