Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACLV7D_RS02010 Genome accession   NZ_OZ217345
Coordinates   383889..384815 (+) Length   308 a.a.
NCBI ID   WP_000103703.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 378889..389815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS02000 (SMIF22_03840) amiA3 380338..382326 (+) 1989 WP_173233269.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7D_RS02005 (SMIF22_03850) amiC 382393..383889 (+) 1497 WP_112443790.1 ABC transporter permease Regulator
  ACLV7D_RS02010 (SMIF22_03860) amiD 383889..384815 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7D_RS02015 (SMIF22_03870) amiE 384824..385891 (+) 1068 WP_218764302.1 ABC transporter ATP-binding protein Regulator
  ACLV7D_RS02020 (SMIF22_03880) amiF 385902..386828 (+) 927 WP_001291301.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7D_RS02025 (SMIF22_03890) - 387281..388258 (+) 978 WP_218764303.1 ABC transporter substrate binding protein -
  ACLV7D_RS02030 (SMIF22_03900) - 388270..389163 (+) 894 WP_173233257.1 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34642.72 Da        Isoelectric Point: 9.8044

>NTDB_id=1170353 ACLV7D_RS02010 WP_000103703.1 383889..384815(+) (amiD) [Streptococcus mitis isolate S. mitis F22]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1170353 ACLV7D_RS02010 WP_000103703.1 383889..384815(+) (amiD) [Streptococcus mitis isolate S. mitis F22]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACCATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACAGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
GCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGCGTGATGATGGAAGTTTATAATGTCATCTCAAACATCCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATTTGATTTTTGCCATGAGTGTAACAACATGGATTGGAATTGCCTTCAT
GATTCGTGTGCAAATCTTGCGTTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAACATTATGCCACAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

82.143

100

0.821
  amiD Streptococcus thermophilus LMD-9

82.143

100

0.821

Multiple sequence alignment