Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ACLV7D_RS02005 Genome accession   NZ_OZ217345
Coordinates   382393..383889 (+) Length   498 a.a.
NCBI ID   WP_112443790.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 377393..388889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS01995 (SMIF22_03830) - 378462..379655 (+) 1194 WP_173233271.1 O-antigen ligase family protein -
  ACLV7D_RS02000 (SMIF22_03840) amiA3 380338..382326 (+) 1989 WP_173233269.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7D_RS02005 (SMIF22_03850) amiC 382393..383889 (+) 1497 WP_112443790.1 ABC transporter permease Regulator
  ACLV7D_RS02010 (SMIF22_03860) amiD 383889..384815 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7D_RS02015 (SMIF22_03870) amiE 384824..385891 (+) 1068 WP_218764302.1 ABC transporter ATP-binding protein Regulator
  ACLV7D_RS02020 (SMIF22_03880) amiF 385902..386828 (+) 927 WP_001291301.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7D_RS02025 (SMIF22_03890) - 387281..388258 (+) 978 WP_218764303.1 ABC transporter substrate binding protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55576.08 Da        Isoelectric Point: 9.3559

>NTDB_id=1170352 ACLV7D_RS02005 WP_112443790.1 382393..383889(+) (amiC) [Streptococcus mitis isolate S. mitis F22]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTLVPRKLIFKQDPNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SMDSSVTVEANATNKAIYEKYINQLGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTAQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVASYGKDDPYTATESNYQYPSMIVSSAIAGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGA
LTFLMALPTIALVYIVRLLGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1170352 ACLV7D_RS02005 WP_112443790.1 382393..383889(+) (amiC) [Streptococcus mitis isolate S. mitis F22]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCGATTTTCTTAGTAACGACTTTGACCTACACGATTAT
CTATACCTTGGTTCCTCGAAAATTGATTTTCAAGCAGGATCCTAACTATAATAAAATCGCAACAACGGCTGATAAACGTG
ATAACTATGAAAATACTGTGTTTGAGCGTATGGGCTACATTGAGTATTACGATACTAAAGAGTTGCAAGAAAAGGCAAGT
AGCATGGATTCTTCTGTAACAGTAGAGGCAAATGCGACCAATAAAGCTATTTATGAAAAGTACATCAATCAATTAGGTCA
TGGTTGGACTTTGGGAGAATTTACTGAAAGTGGTCAATTTTATGCTACTCGTGAAATTCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGATATTGATCATACAAATAAAATTCAAGACCCTGAAAATCCAGACTTGAAACGCTACCTT
CGTTTCGAAAATGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGTACTAAACATAAATATCTCTTGTACTTTAACAG
TCAGTTCCCATTTGTGCATCAAAACTTTGTTAATATCAATTTAGGTGACTCTTATCCAACCTATGCTAATACACCAGTTC
TTCAGGTTATTACTCAAGGTCAAGGACAAACCAAAACTGCTCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTA
AATATTTACTCAAGAACCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTATGGGAAAGATGATCCTTA
TACAGCGACTGAAAGTAATTACCAATATCCATCTATGATTGTCAGCTCTGCTATTGCTGGTTTGATTGGTTTGGTGATTT
CTTATGCGATTGCCGTGCCACTTGGTTCAGCCATGGCTCGTTTCAAGAACACTTGGATTGATAGCTTCTCAACAGGGGCT
TTGACCTTCTTGATGGCACTTCCAACAATCGCCCTTGTTTATATTGTTCGATTGCTTGGTTCCTCAATTGGTTTACCAGA
TTCATTCCCTATCTTAGGGGCTGGAGATTGGCGTTCGTACGTTTTACCAGCAGTAATCCTTGGTTTGTTGGGTGCTCCTG
GTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTCGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCGTTAT
TGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCCAATAACTCTATGGTCGTTGGTCTTGTCTTCATTTTTACATGTATTTCTATCTTCTCCCTTCTTTTAGGAGAT
ATTTGGATGACCATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.908

100

0.769
  amiC Streptococcus thermophilus LMG 18311

76.707

100

0.767
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763

Multiple sequence alignment