Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACLV7Z_RS10530 Genome accession   NZ_OZ217343
Coordinates   2152096..2152758 (-) Length   220 a.a.
NCBI ID   WP_173278778.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2147096..2157758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS10510 (SMIG22_20800) - 2147612..2148790 (-) 1179 WP_050242832.1 acetyl-CoA C-acetyltransferase -
  ACLV7Z_RS10515 (SMIG22_20810) - 2148808..2149653 (-) 846 WP_050242833.1 3-hydroxybutyryl-CoA dehydrogenase -
  ACLV7Z_RS10520 (SMIG22_20820) - 2149735..2150943 (-) 1209 WP_218774411.1 acyl-CoA dehydrogenase family protein -
  ACLV7Z_RS10525 (SMIG22_20830) hpf 2151468..2152016 (-) 549 WP_050073478.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACLV7Z_RS10530 (SMIG22_20840) comFC/cflB 2152096..2152758 (-) 663 WP_173278778.1 ComF family protein Machinery gene
  ACLV7Z_RS10535 (SMIG22_20850) comFA/cflA 2152755..2154053 (-) 1299 WP_218774413.1 DEAD/DEAH box helicase Machinery gene
  ACLV7Z_RS10540 (SMIG22_20860) - 2154109..2154744 (+) 636 WP_112444668.1 YigZ family protein -
  ACLV7Z_RS10545 - 2154838..2154933 (+) 96 Protein_2035 PH domain-containing protein -
  ACLV7Z_RS10550 (SMIG22_20870) cysK 2155030..2155956 (+) 927 WP_175880407.1 cysteine synthase A -
  ACLV7Z_RS10555 (SMIG22_20890) tsf 2156078..2157118 (-) 1041 WP_000808091.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25078.14 Da        Isoelectric Point: 8.3201

>NTDB_id=1170240 ACLV7Z_RS10530 WP_173278778.1 2152096..2152758(-) (comFC/cflB) [Streptococcus mitis isolate S. mitis G22]
MKCLLCGQTMKTVLTFSSLLLLKNDASCLCLDCDSTFERIGEENCPNCMKTGLSTKCQDCQFWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYRFVVIPLSPERLLDRGFNQVEGLVEAAGFSYLDLLGKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1170240 ACLV7Z_RS10530 WP_173278778.1 2152096..2152758(-) (comFC/cflB) [Streptococcus mitis isolate S. mitis G22]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAAGAATGATGCCTC
CTGTCTTTGTTTAGATTGTGATTCTACTTTTGAGAGGATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGGTTTGT
CAACGAAGTGTCAAGACTGTCAATTTTGGTGTAAAGAAGGAGTTGAGGTTAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGACGGAGACTTCCTTTTAAGAAAAGTGTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATAGATTTGTCGTAATTCCCCTAAGCCCTGAAAGATTGCTTGACAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGTTTTTCGTATCTGGATTTACTAGGGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTGAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

94.545

100

0.945
  comFC/cflB Streptococcus pneumoniae Rx1

94.091

100

0.941
  comFC/cflB Streptococcus pneumoniae D39

94.091

100

0.941
  comFC/cflB Streptococcus pneumoniae R6

94.091

100

0.941
  comFC/cflB Streptococcus mitis NCTC 12261

93.182

100

0.932
  comFC/cflB Streptococcus mitis SK321

92.727

100

0.927
  comFC Bacillus subtilis subsp. subtilis str. 168

35.526

100

0.368

Multiple sequence alignment