Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV65_RS02045 Genome accession   NZ_OZ217342
Coordinates   389232..391211 (+) Length   659 a.a.
NCBI ID   WP_411864389.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 384232..396211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS02030 (SMIB22_03900) - 385146..386006 (-) 861 WP_411864388.1 AraC family transcriptional regulator -
  ACLV65_RS02035 (SMIB22_03910) gtfA 386056..387216 (+) 1161 Protein_346 sucrose phosphorylase -
  ACLV65_RS02040 (SMIB22_03920) - 387354..388547 (+) 1194 WP_218774185.1 O-antigen ligase family protein -
  ACLV65_RS02045 (SMIB22_03930) amiA3 389232..391211 (+) 1980 WP_411864389.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV65_RS02050 (SMIB22_03940) amiC 391278..392774 (+) 1497 WP_267240681.1 ABC transporter permease Regulator
  ACLV65_RS02055 (SMIB22_03950) amiD 392774..393700 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV65_RS02060 (SMIB22_03960) amiE 393709..394776 (+) 1068 WP_173229297.1 ABC transporter ATP-binding protein Regulator
  ACLV65_RS02065 (SMIB22_03970) amiF 394787..395713 (+) 927 WP_368078916.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72826.11 Da        Isoelectric Point: 4.7795

>NTDB_id=1170105 ACLV65_RS02045 WP_411864389.1 389232..391211(+) (amiA3) [Streptococcus mitis isolate S. mitis B22]
MKKSRVFATAGLVLLAAGVLAACSSSKSSDSSAPKAYGYVYTADPETLDYLVSGKQSTKVVTSNGIDGLFSNDKYGNLIP
AVAENWEVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKKSQAIYLAENSVKGLADYLSGTSTDFSTV
GVKAVDDYTLQYTLNQSEPYWNSKMVYSIFWPLNEEFEKSKGSDFAKPTDPTSLLYNGPFLLKALTAKSSVEFVKNEQYW
DKENVHIDTVTLAYYDGSDQESLERNFTNGAYSKARLFPTSSNYAKVEEDYKDNIYYTQPEAGIAGLGVNIDRQSYTYTS
KSTDLEKNSTKKALLNKDFRQALNFAFDRSSYSAQINGKDGATLAVRNLFVKPDFVSAGDKTFGDLVAAQLPAYGDEWKG
VNLADGQDGLFNVDKAKTEFAKAKKALEAEGVQFPIHLDIPVDQTAKNFVARIQSFKQSIETVLGAENVVIDIQQMTTDE
LHNVTYYAANAAAEDWDLSGAVGWNPDFEDPSTYLDILKSTSGETTKSYLGFDNPNSSAVVQVGLKEYDKLVDEAAKETS
NLNVRYEKYAAAQAWLTDSSLFIPAMASTGAAPVISRIVPFTNVFAQSGDKGSELYFKYIQLQDKVVTKEEYEKAREKWL
KEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1170105 ACLV65_RS02045 WP_411864389.1 389232..391211(+) (amiA3) [Streptococcus mitis isolate S. mitis B22]
ATGAAAAAAAGTCGTGTATTTGCTACGGCAGGTCTTGTTTTATTAGCAGCAGGTGTACTTGCAGCATGCAGTTCTTCAAA
ATCATCTGATTCATCAGCGCCAAAAGCTTACGGTTATGTTTATACAGCAGATCCAGAAACATTGGACTACTTAGTTTCAG
GTAAACAAAGTACAAAGGTAGTAACTTCAAATGGTATTGATGGTTTATTTTCTAATGATAAGTATGGAAATCTTATTCCT
GCAGTTGCAGAAAATTGGGAAGTGTCAAAAGATGGCTTAACCTACACTTATAAGATTCGTAAGGGTGTAAAATGGTTTAC
ATCAGATGGTGAAGAATACGCTGAAGTGACGGCTAAAGACTTCGTAAATGGATTGAAGCACGCTGCAGATAAAAAATCAC
AGGCTATTTACCTAGCTGAAAATTCTGTTAAAGGTTTGGCGGATTACCTATCAGGGACTTCAACAGACTTTTCAACAGTT
GGTGTTAAAGCGGTTGATGATTATACACTTCAATATACTTTGAACCAGTCAGAACCATATTGGAATTCTAAAATGGTTTA
TTCAATTTTCTGGCCTTTAAACGAAGAATTTGAAAAATCAAAGGGAAGCGATTTCGCTAAACCGACAGATCCAACATCTT
TGCTCTACAATGGACCATTCTTGCTCAAAGCTTTGACTGCAAAATCTTCTGTGGAATTTGTAAAAAATGAGCAATATTGG
GACAAAGAAAATGTTCATATAGACACTGTTACCCTAGCATACTATGATGGTTCTGACCAGGAATCGCTGGAACGTAACTT
TACAAATGGAGCTTATAGTAAAGCTCGCCTTTTTCCTACTAGTTCTAACTATGCTAAAGTTGAAGAAGACTACAAAGATA
ATATCTATTATACCCAACCAGAAGCTGGAATTGCAGGTTTGGGTGTGAATATTGATCGTCAAAGTTACACTTATACTTCT
AAGTCAACCGATTTAGAAAAAAACTCTACTAAAAAGGCATTACTTAATAAAGATTTTCGTCAAGCGTTGAACTTTGCCTT
TGATCGTTCGTCATACTCTGCTCAAATAAATGGTAAAGACGGAGCTACTTTAGCAGTTCGGAATTTATTCGTGAAACCAG
ATTTTGTTTCAGCTGGAGATAAGACTTTTGGTGATTTAGTTGCTGCTCAACTTCCTGCCTACGGAGATGAGTGGAAAGGT
GTGAATTTAGCTGATGGTCAGGATGGTTTATTTAATGTTGACAAAGCTAAAACAGAATTTGCCAAAGCGAAGAAAGCTTT
AGAAGCAGAGGGTGTACAATTTCCTATTCATCTGGATATCCCAGTAGACCAAACAGCCAAAAATTTTGTTGCACGTATTC
AATCCTTTAAACAATCTATAGAGACGGTTCTTGGTGCTGAAAATGTCGTAATTGATATTCAACAAATGACAACTGACGAG
TTGCATAATGTTACTTATTATGCTGCAAATGCTGCTGCAGAAGATTGGGATTTATCTGGAGCAGTTGGATGGAATCCAGA
TTTTGAAGATCCATCTACTTATCTTGATATTTTGAAATCAACCAGTGGTGAAACGACAAAATCTTACTTAGGGTTTGATA
ATCCAAATAGTTCTGCAGTAGTTCAAGTTGGTTTGAAAGAATACGATAAATTAGTTGATGAGGCTGCTAAAGAGACAAGT
AATTTGAATGTACGCTATGAAAAATATGCTGCAGCTCAAGCATGGTTGACAGATAGTTCTCTCTTTATTCCTGCTATGGC
TTCTACTGGAGCAGCACCAGTAATTTCACGAATTGTTCCGTTTACAAATGTGTTTGCACAATCTGGGGATAAAGGTTCGG
AACTATACTTTAAATATATTCAATTACAAGATAAGGTTGTAACAAAAGAAGAGTATGAAAAAGCTCGTGAAAAATGGTTG
AAAGAAAAAGCTGAATCAAATGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

67.879

100

0.68
  amiA3 Streptococcus thermophilus LMG 18311

67.727

100

0.678
  amiA Streptococcus salivarius strain HSISS4

66.161

100

0.662

Multiple sequence alignment