Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ACLV65_RS02050 Genome accession   NZ_OZ217342
Coordinates   391278..392774 (+) Length   498 a.a.
NCBI ID   WP_267240681.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 386278..397774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS02040 (SMIB22_03920) - 387354..388547 (+) 1194 WP_218774185.1 O-antigen ligase family protein -
  ACLV65_RS02045 (SMIB22_03930) amiA3 389232..391211 (+) 1980 WP_411864389.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV65_RS02050 (SMIB22_03940) amiC 391278..392774 (+) 1497 WP_267240681.1 ABC transporter permease Regulator
  ACLV65_RS02055 (SMIB22_03950) amiD 392774..393700 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV65_RS02060 (SMIB22_03960) amiE 393709..394776 (+) 1068 WP_173229297.1 ABC transporter ATP-binding protein Regulator
  ACLV65_RS02065 (SMIB22_03970) amiF 394787..395713 (+) 927 WP_368078916.1 ATP-binding cassette domain-containing protein Regulator
  ACLV65_RS02070 (SMIB22_03980) - 396128..397006 (-) 879 WP_261054365.1 LysR family transcriptional regulator -
  ACLV65_RS02075 (SMIB22_03990) - 397134..397484 (-) 351 WP_000208712.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55600.13 Da        Isoelectric Point: 9.3559

>NTDB_id=1170106 ACLV65_RS02050 WP_267240681.1 391278..392774(+) (amiC) [Streptococcus mitis isolate S. mitis B22]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTLVPRKLIFKQDPNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SMDSSVTVEANATNKAIYEKYINQLGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTAQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVASYGKDDPYTATESNYQYPSMIVSSAIAGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGV
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPATAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1170106 ACLV65_RS02050 WP_267240681.1 391278..392774(+) (amiC) [Streptococcus mitis isolate S. mitis B22]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCGATTTTCTTAGTAACGACTTTGACCTACACGATTAT
CTATACCTTGGTTCCTCGAAAATTGATTTTCAAGCAGGATCCTAACTATAATAAAATCGCGACAACGGCTGATAAACGTG
ATAACTATGAAAATACTGTGTTTGAGCGTATGGGCTACATTGAGTATTACGATACTAAGGAGTTGCAAGAAAAGGCAAGT
AGCATGGATTCTTCTGTAACAGTAGAGGCAAATGCGACCAATAAAGCTATTTATGAAAAGTACATCAATCAATTAGGTCA
TGGTTGGACTTTGGGAGAATTTACTGAAAGTGGTCAATTTTATGCTACTCGTGAAATTCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGACCATACAAATAAAATTCAAGACCCTGAAAATCCAGACTTGAAACGTTACCTT
CGTTTCGAAAATGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGTACTAAACATAAATATCTCTTGTACTTCAACAG
TCAGTTCCCATTTGTGCATCAAAATTTTGTGAATATCAATTTAGGTGACTCTTATCCAACCTATGCTAATACACCAGTTC
TTCAGGTTATTACTCAAGGTCAAGGACAAACCAAAACTGCCCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTA
AATATTTACTCAAGAACCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTATGGGAAAGATGATCCTTA
CACAGCGACTGAAAGTAATTACCAATATCCATCTATGATTGTCAGCTCTGCTATTGCTGGTTTGATTGGTTTGGTGATTT
CTTATGCGATTGCCGTGCCACTTGGTTCAGCCATGGCTCGTTTCAAGAACACTTGGATCGATAGCTTCTCAACAGGGGTT
TTGACCTTCTTGCTTGCTCTTCCAACCATTGCCTTGGTTTACATCGTTCGTTTGATTGGATCATCTATTGGTCTTCCAGA
TTCGTTCCCTATCTTGGGTGCTGGAGATTGGCGTTCATACGTTTTACCAGCAGTGATCCTTGGTTTGTTGGGTGCTCCTG
CTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCTCAAGACTTTGTTCGTTTTGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCGTTAT
TGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCCCTTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.108

100

0.771
  amiC Streptococcus thermophilus LMG 18311

77.108

100

0.771
  amiC Streptococcus thermophilus LMD-9

76.707

100

0.767

Multiple sequence alignment