Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACLV65_RS02065 Genome accession   NZ_OZ217342
Coordinates   394787..395713 (+) Length   308 a.a.
NCBI ID   WP_368078916.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 389787..400713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS02050 (SMIB22_03940) amiC 391278..392774 (+) 1497 WP_267240681.1 ABC transporter permease Regulator
  ACLV65_RS02055 (SMIB22_03950) amiD 392774..393700 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV65_RS02060 (SMIB22_03960) amiE 393709..394776 (+) 1068 WP_173229297.1 ABC transporter ATP-binding protein Regulator
  ACLV65_RS02065 (SMIB22_03970) amiF 394787..395713 (+) 927 WP_368078916.1 ATP-binding cassette domain-containing protein Regulator
  ACLV65_RS02070 (SMIB22_03980) - 396128..397006 (-) 879 WP_261054365.1 LysR family transcriptional regulator -
  ACLV65_RS02075 (SMIB22_03990) - 397134..397484 (-) 351 WP_000208712.1 helix-turn-helix domain-containing protein -
  ACLV65_RS02080 (SMIB22_04000) - 397843..399468 (+) 1626 WP_411864390.1 malolactic enzyme -
  ACLV65_RS02085 (SMIB22_04010) - 399545..400492 (+) 948 WP_411864391.1 AEC family transporter -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34831.89 Da        Isoelectric Point: 6.4027

>NTDB_id=1170109 ACLV65_RS02065 WP_368078916.1 394787..395713(+) (amiF) [Streptococcus mitis isolate S. mitis B22]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFEGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEERKEKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKIYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1170109 ACLV65_RS02065 WP_368078916.1 394787..395713(+) (amiF) [Streptococcus mitis isolate S. mitis B22]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTTGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACGTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CGATAATCGGTCTAAATGATACAAGCAATGGAGATATCATTTTTGAAGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCAGAATTGATTCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATTATCATCTGTTCAAAGATGAAGAAGAACGTAAAGAGAAAGTTAAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGCTACCCTCATGAATTTTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCTCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTTTCTGTTCGTGC
CCAAGTTTTGAACTTGCTCAAAAAATTCCAAAAAGAACTTGGTTTGACCTATCTCTTTATCGCCCATGACTTGTCGGTTG
TTCGTTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGATTTACGACCCGAGTCAACATGACTATGAGACTGATAAGCCATCTATGGTTGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCTGAATTGGCACGTTATCAACAAGGATTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-263)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.246

99.026

0.844
  amiF Streptococcus salivarius strain HSISS4

85.246

99.026

0.844
  amiF Streptococcus thermophilus LMD-9

84.918

99.026

0.841

Multiple sequence alignment