Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACLV65_RS02055 Genome accession   NZ_OZ217342
Coordinates   392774..393700 (+) Length   308 a.a.
NCBI ID   WP_000103703.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 387774..398700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS02045 (SMIB22_03930) amiA3 389232..391211 (+) 1980 WP_411864389.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV65_RS02050 (SMIB22_03940) amiC 391278..392774 (+) 1497 WP_267240681.1 ABC transporter permease Regulator
  ACLV65_RS02055 (SMIB22_03950) amiD 392774..393700 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV65_RS02060 (SMIB22_03960) amiE 393709..394776 (+) 1068 WP_173229297.1 ABC transporter ATP-binding protein Regulator
  ACLV65_RS02065 (SMIB22_03970) amiF 394787..395713 (+) 927 WP_368078916.1 ATP-binding cassette domain-containing protein Regulator
  ACLV65_RS02070 (SMIB22_03980) - 396128..397006 (-) 879 WP_261054365.1 LysR family transcriptional regulator -
  ACLV65_RS02075 (SMIB22_03990) - 397134..397484 (-) 351 WP_000208712.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34642.72 Da        Isoelectric Point: 9.8044

>NTDB_id=1170107 ACLV65_RS02055 WP_000103703.1 392774..393700(+) (amiD) [Streptococcus mitis isolate S. mitis B22]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1170107 ACLV65_RS02055 WP_000103703.1 392774..393700(+) (amiD) [Streptococcus mitis isolate S. mitis B22]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAGTCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCTATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGACAGTAACGGTAAATCTCTTTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGCGTGATGATGGAAGTTTATAACGTCATCTCAAACATCCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGTGTGACGACATGGATTGGGATTGCTTTCAT
GATCCGTGTGCAAATCTTGCGTTACCGTGATTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

82.143

100

0.821
  amiD Streptococcus thermophilus LMD-9

82.143

100

0.821

Multiple sequence alignment