Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   ACLV7Q_RS07015 Genome accession   NZ_OZ217341
Coordinates   1422770..1423444 (-) Length   224 a.a.
NCBI ID   WP_000590628.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1417770..1428444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS07000 (SMIC22_13740) - 1420061..1420990 (-) 930 WP_218757629.1 peptidase U32 family protein -
  ACLV7Q_RS07005 (SMIC22_13750) - 1421130..1421417 (+) 288 WP_112443507.1 DUF3270 domain-containing protein -
  ACLV7Q_RS07010 (SMIC22_13760) ciaH 1421446..1422780 (-) 1335 WP_218757630.1 two-component system sensor histidine kinase CiaH Regulator
  ACLV7Q_RS07015 (SMIC22_13770) ciaR 1422770..1423444 (-) 675 WP_000590628.1 two-component system response regulator CiaR Regulator
  ACLV7Q_RS07020 (SMIC22_13780) - 1423552..1426098 (-) 2547 WP_218757631.1 M1 family metallopeptidase -
  ACLV7Q_RS07025 (SMIC22_13790) - 1426221..1426661 (-) 441 WP_218757632.1 ASCH domain-containing protein -
  ACLV7Q_RS07030 (SMIC22_13800) - 1426621..1427506 (-) 886 Protein_1336 putative PEP-binding protein -
  ACLV7Q_RS07035 (SMIC22_13810) - 1427484..1427983 (-) 500 Protein_1337 NUDIX hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25485.29 Da        Isoelectric Point: 4.2907

>NTDB_id=1170051 ACLV7Q_RS07015 WP_000590628.1 1422770..1423444(-) (ciaR) [Streptococcus mitis isolate S. mitis C22]
MIKILLVEDDLGLSNSVFDFLDDFADVMQVFDGEEGLYEAESGVYDLILLDLMLPEKNGFQVLKELREKGITTPVLIMTA
KESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDILINLSTNTVKVEDTTVELLGKEFDLLVY
FLQNQNVILPKTQIFDRLWGFDSDTTISVVEVYVSKVRKKLKGTTFAENLQTLRSVGYILKDVQ

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1170051 ACLV7Q_RS07015 WP_000590628.1 1422770..1423444(-) (ciaR) [Streptococcus mitis isolate S. mitis C22]
ATGATAAAAATCTTATTGGTTGAGGATGACCTAGGCCTGTCAAATTCAGTATTTGACTTTTTAGACGATTTTGCGGATGT
CATGCAGGTATTTGATGGGGAAGAGGGTCTCTACGAAGCTGAAAGTGGTGTCTATGACTTGATTTTGCTCGATTTGATGT
TACCAGAAAAAAATGGCTTCCAAGTCTTGAAAGAATTGCGTGAAAAGGGAATTACGACACCAGTTCTGATCATGACCGCC
AAGGAAAGTTTGGATGACAAGGGACATGGATTTGAACTGGGAGCGGATGATTATCTGACCAAGCCTTTCTACCTAGAAGA
ACTCAAAATGCGGATTCAGGCCCTTCTCAAACGTTCAGGTAAGTTTAATGAAAATACGCTATCTTATGGAGATATTCTCA
TCAATTTATCAACAAATACCGTTAAGGTTGAAGATACTACTGTCGAATTGCTGGGGAAAGAGTTCGATTTACTAGTTTAT
TTCCTTCAAAATCAAAATGTTATTTTGCCTAAGACGCAGATTTTTGATCGTCTATGGGGATTTGATAGTGACACAACGAT
TTCGGTTGTCGAAGTTTATGTTTCAAAAGTCCGTAAGAAATTAAAAGGAACCACTTTTGCAGAGAATTTGCAAACCTTAC
GCAGTGTTGGGTATATTTTAAAAGATGTTCAGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

97.321

100

0.973
  ciaR Streptococcus pneumoniae D39

97.321

100

0.973
  ciaR Streptococcus pneumoniae R6

97.321

100

0.973
  ciaR Streptococcus pneumoniae TIGR4

97.321

100

0.973
  ciaR Streptococcus mutans UA159

87.946

100

0.879
  covR Lactococcus lactis subsp. lactis strain DGCC12653

37.611

100

0.379
  vicR Streptococcus mutans UA159

36.481

100

0.379

Multiple sequence alignment