Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB5Y62_RS16620 Genome accession   NZ_OZ078860
Coordinates   3632359..3633882 (-) Length   507 a.a.
NCBI ID   WP_004735753.1    Uniprot ID   A0A7W4CAC5
Organism   Vibrio splendidus isolate A06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3627359..3638882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS16595 - 3627400..3627663 (+) 264 WP_004735759.1 YihD family protein -
  AB5Y62_RS16600 ccoG 3627990..3629408 (+) 1419 WP_004735757.1 cytochrome c oxidase accessory protein CcoG -
  AB5Y62_RS16605 - 3629483..3630469 (+) 987 WP_280612845.1 serine/threonine protein kinase -
  AB5Y62_RS16610 - 3630525..3631124 (+) 600 WP_004735755.1 thiol:disulfide interchange protein DsbA/DsbL -
  AB5Y62_RS16615 - 3631264..3632217 (+) 954 WP_017092342.1 DUF2860 domain-containing protein -
  AB5Y62_RS16620 comM 3632359..3633882 (-) 1524 WP_004735753.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB5Y62_RS16625 ilvG 3634355..3636001 (+) 1647 WP_017107540.1 acetolactate synthase 2 catalytic subunit -
  AB5Y62_RS16630 ilvM 3636003..3636287 (+) 285 WP_017077311.1 acetolactate synthase 2 small subunit -
  AB5Y62_RS16635 - 3636300..3637268 (+) 969 WP_004735750.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55592.70 Da        Isoelectric Point: 7.6532

>NTDB_id=1166603 AB5Y62_RS16620 WP_004735753.1 3632359..3633882(-) (comM) [Vibrio splendidus isolate A06]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHHVDVSDNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGNEQ
IEKKHLSEALGYRAMDRLLKQLSAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1166603 AB5Y62_RS16620 WP_004735753.1 3632359..3633882(-) (comM) [Vibrio splendidus isolate A06]
ATGGGACTCGCGATAATTCACAGCCGGGCTAGTGTGGGAGTAGAGGCACCAGAAGTGACCGTTGAAGTGCATATAAGCAA
CGGTATGCCTGGGTTTACATTGGTGGGGCTACCTGAAACGACGGTCAAGGAATCTAAAGATCGAGTCAGGAGTGCCATCA
TCAATTCTCGCTTTGAATTTCCATCAAAAAGGATCACGGTCAACCTCGCGCCTGCTGATTTACCCAAGGAGGGAGGCCGT
TTCGATCTGCCAATCGCGCTTGGGATTTTGGTGGCGTCAGATCAGCTTCCGACATCAAAAATAGCTCAACATGAATTTAT
CGGTGAGTTGGCATTGTCAGGAGAACTTCGCTCGGTAAAGGGCGTTCTGCCTGCGACGTTAGCCGCCGATAGTGTCGAAC
GATGCTTAGTGGTTCCACACCACAATGGTGATCAGGCAGCCTTAGTCGGCAAAGGGGCTCATAAATCAGCGCAAACCTTG
CTAGAGGTTTGTGCGGATATGTGTGGCCAGGCTCAGCTTGGTTTATATCGAACCGAGCATCATCATGTCGATGTGTCTGA
TAATCGTGACTTACAAGATATTATTGGCCAGCAGCAAGGTAAGCGAGCACTGGAGATAGCTGCTGCGGGCAACCATAACC
TGCTTTTTCTCGGCCCGCCTGGAACTGGGAAAACCATGTTGGCTTCTCGATTGCGCGATTTGTTACCTGAGATGAGTGAC
GACGAGGCGATGGAAACGGCTTCGGTGGCTTCTTTAACGCAACAAGAGATCAATCAATACAACTGGAAACAACGACCTTT
CCGTTCTCCACACCATTCGAGTTCGATGGCAGCATTGGTCGGTGGTGGCTCGATACCTCGCCCCGGTGAGATATCTTTGG
CGCATAATGGCTTATTGTTTCTTGATGAGATGCCAGAGTTTGAGCGTAAGGTGCTTGATTCACTGCGAGAGCCGCTAGAG
TCGGGTGAAATCATTATCTCCCGTGTCGCGGGTAAGACTCGCTTTCCTGCTCGCTTTCAATTAGTCGGTGCACTTAACCC
AAGTCCAACAGGTTATTACGAGGGCAATCAAGCTCGAGCGAACCCGCAAATTATCCTGCGTTACCTCAACCGCTTATCTG
GGCCATTGTTGGATAGATTCGATATGTCATTGGAGATCCCTCTATTGCCCAAAGGGATGTTAGCCGAAGGAGGCGATCGT
GGAGAAACCACTCAAGTCGTGAAGCAACGAGTTAAACAAGCGCGTCAGTTGATGTTATCTCGAAACCATAAGTCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCATTGCGACGCGAAGATGCGGAGTTTCTTGAGACCGCACTGCATC
GATTGGGTTTATCGATTCGTGCCTATCATCGAATCATCAAGGTAGCGCGAACTATTGCAGACTTAGAGGGTAACGAGCAG
ATTGAAAAGAAGCACTTATCAGAGGCACTTGGCTACCGAGCGATGGATCGCTTGCTGAAACAACTTTCAGCTCAAGCTGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4CAC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Vibrio campbellii strain DS40M4

83.235

100

0.832
  comM Haemophilus influenzae Rd KW20

65.483

100

0.655
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

48.589

97.83

0.475
  comM Legionella pneumophila strain ERS1305867

48.589

97.83

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.803

0.424

Multiple sequence alignment