Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB3Y84_RS05095 Genome accession   NZ_OZ061291
Coordinates   1021949..1022353 (-) Length   134 a.a.
NCBI ID   WP_021722514.1    Uniprot ID   -
Organism   Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1016949..1027353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y84_RS05065 - 1017105..1018637 (+) 1533 WP_201247960.1 Nramp family divalent metal transporter -
  AB3Y84_RS05070 - 1018739..1019707 (+) 969 WP_367293642.1 PhoH family protein -
  AB3Y84_RS05075 - 1019765..1020244 (+) 480 WP_367293643.1 NUDIX hydrolase -
  AB3Y84_RS05080 ybeY 1020396..1020884 (+) 489 WP_021722516.1 rRNA maturation RNase YbeY -
  AB3Y84_RS05085 - 1020868..1021323 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  AB3Y84_RS05090 - 1021337..1021915 (+) 579 WP_367293644.1 nucleotidyltransferase family protein -
  AB3Y84_RS05095 comFC 1021949..1022353 (-) 405 WP_021722514.1 ComF family protein Machinery gene
  AB3Y84_RS05100 comFA 1022596..1023918 (-) 1323 WP_058212250.1 DEAD/DEAH box helicase Machinery gene
  AB3Y84_RS05105 - 1023975..1024604 (+) 630 WP_003130660.1 YigZ family protein -
  AB3Y84_RS05110 - 1024738..1025235 (+) 498 WP_003130662.1 VanZ family protein -
  AB3Y84_RS05115 - 1025283..1026302 (+) 1020 WP_012897709.1 DUF475 domain-containing protein -
  AB3Y84_RS05120 - 1026417..1027163 (+) 747 WP_367293645.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15677.11 Da        Isoelectric Point: 9.8798

>NTDB_id=1165695 AB3Y84_RS05095 WP_021722514.1 1021949..1022353(-) (comFC) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
MKDYFSQYKFVGDYRLYQIFEPYFKSISPKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1165695 AB3Y84_RS05095 WP_021722514.1 1021949..1022353(-) (comFC) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAGTAT
TTCCCCAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.164

100

0.672
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.889

100

0.418
  comFC Latilactobacillus sakei subsp. sakei 23K

39.37

94.776

0.373

Multiple sequence alignment