Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACKPCE_RS08725 Genome accession   NZ_OY762556
Coordinates   2113816..2114265 (+) Length   149 a.a.
NCBI ID   WP_276992869.1    Uniprot ID   -
Organism   MAG: Bacteroides graminisolvens isolate c2c85108-0b76-4fb4-8ed9-98fc9390ecb6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2108816..2119265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPCE_RS08705 (SLT85_RS08685) - 2109467..2110222 (-) 756 WP_276963191.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ACKPCE_RS08710 (SLT85_RS08690) - 2110346..2111920 (-) 1575 WP_024996160.1 Rne/Rng family ribonuclease -
  ACKPCE_RS08715 (SLT85_RS08695) - 2112190..2112468 (-) 279 WP_024996159.1 HU family DNA-binding protein -
  ACKPCE_RS08720 (SLT85_RS08700) mutY 2112673..2113716 (+) 1044 WP_319504873.1 A/G-specific adenine glycosylase -
  ACKPCE_RS08725 (SLT85_RS08705) ssb 2113816..2114265 (+) 450 WP_276992869.1 single-stranded DNA-binding protein Machinery gene
  ACKPCE_RS08730 (SLT85_RS08710) gldE 2114367..2115710 (+) 1344 WP_319504874.1 gliding motility-associated protein GldE -
  ACKPCE_RS08735 (SLT85_RS08715) - 2115782..2116417 (+) 636 WP_319504875.1 4'-phosphopantetheinyl transferase superfamily protein -
  ACKPCE_RS08740 (SLT85_RS08720) - 2116499..2117227 (-) 729 WP_319504876.1 DUF4465 domain-containing protein -
  ACKPCE_RS08745 (SLT85_RS08725) - 2117267..2119231 (-) 1965 WP_407654960.1 DUF5074 domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16401.38 Da        Isoelectric Point: 4.9497

>NTDB_id=1161621 ACKPCE_RS08725 WP_276992869.1 2113816..2114265(+) (ssb) [MAG: Bacteroides graminisolvens isolate c2c85108-0b76-4fb4-8ed9-98fc9390ecb6]
MSVNKVILLGNVGKDPEVRYLDSGIAVASFPLATSDRAYTLANGTQVPERTEWHNLVLWRGLAETAEKYVHKGDKLYIEG
KIRTRSYDDQAGVKRYVTEIFVDNMEMLTPKGTSTGTFAPNQPASSAAPQSQPIVEPARDDNSADDLPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1161621 ACKPCE_RS08725 WP_276992869.1 2113816..2114265(+) (ssb) [MAG: Bacteroides graminisolvens isolate c2c85108-0b76-4fb4-8ed9-98fc9390ecb6]
ATGTCAGTAAATAAAGTGATTTTGTTGGGAAATGTTGGGAAAGATCCTGAAGTGAGATATTTGGATTCAGGTATAGCTGT
TGCCAGCTTTCCATTAGCGACTTCAGACCGTGCTTATACATTGGCTAACGGAACGCAGGTGCCCGAAAGAACAGAATGGC
ACAATCTTGTTTTGTGGCGCGGTCTGGCAGAGACAGCAGAAAAATATGTGCATAAAGGTGATAAATTATATATTGAAGGA
AAAATAAGAACTCGTTCGTATGACGATCAGGCTGGAGTGAAGCGATATGTTACGGAAATATTTGTGGATAACATGGAAAT
GCTTACTCCCAAAGGTACGTCAACAGGAACGTTTGCACCCAATCAACCGGCAAGCTCTGCTGCTCCTCAATCTCAACCTA
TAGTTGAGCCTGCTCGTGATGATAACTCAGCTGATGATTTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

42.614

100

0.503
  ssb Neisseria meningitidis MC58

37.5

100

0.443
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.443
  ssb Glaesserella parasuis strain SC1401

40.94

100

0.409
  ssb Latilactobacillus sakei subsp. sakei 23K

31.214

100

0.362

Multiple sequence alignment