Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SLP02_RS00885 Genome accession   NZ_OY762512
Coordinates   175627..175992 (+) Length   121 a.a.
NCBI ID   WP_229641419.1    Uniprot ID   -
Organism   Pleurocapsa sp. FMAR1 isolate 44838     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 170627..180992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLP02_RS00875 - 172271..173035 (+) 765 WP_319418768.1 aminotransferase class IV -
  SLP02_RS00880 hmpF 173048..174763 (-) 1716 WP_319418769.1 pilus motility taxis protein HmpF -
  SLP02_RS00885 pilH 175627..175992 (+) 366 WP_229641419.1 response regulator transcription factor Machinery gene
  SLP02_RS00890 - 176055..176582 (+) 528 WP_319418770.1 chemotaxis protein CheW -
  SLP02_RS00895 - 176785..179367 (+) 2583 WP_319418771.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13517.81 Da        Isoelectric Point: 5.8739

>NTDB_id=1161591 SLP02_RS00885 WP_229641419.1 175627..175992(+) (pilH) [Pleurocapsa sp. FMAR1 isolate 44838]
MSKVLIVEDSLAQRQMISDLLKGSGLKVTVACDGVEALEHLESFNPDIVVMDIVMPRMNGYELCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPVELIGTVKQLLRA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1161591 SLP02_RS00885 WP_229641419.1 175627..175992(+) (pilH) [Pleurocapsa sp. FMAR1 isolate 44838]
ATGAGCAAAGTTCTAATCGTAGAAGATAGTTTGGCACAAAGACAAATGATTTCCGATCTTTTAAAAGGTAGCGGTTTGAA
GGTGACTGTTGCTTGTGATGGAGTAGAAGCTTTGGAGCATTTGGAATCATTTAATCCTGACATAGTTGTTATGGATATTG
TTATGCCTAGAATGAATGGCTATGAGCTATGCCGCCGTTTAAAATCAGATCCCAAAACACAGAATGTTCCAGTAGTTATG
TGTTCTTCTAAAGGAGAGGAATTTGATCGCTACTGGGGGATGAAGCAAGGCGCAGATGCTTATATTGCCAAACCTTTTCA
GCCAGTTGAATTAATTGGCACCGTCAAACAACTGCTACGGGCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.667

99.174

0.76
  micA Streptococcus pneumoniae Cp1015

41.129

100

0.421
  pilG Acinetobacter baumannii strain A118

41.739

95.041

0.397
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  chpA Acinetobacter baumannii strain A118

38.136

97.521

0.372
  pilL-C Synechocystis sp. PCC 6803

37.19

100

0.372

Multiple sequence alignment