Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   OWO33_RS01405 Genome accession   NZ_OX461090
Coordinates   236837..237235 (+) Length   132 a.a.
NCBI ID   WP_024440007.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-336     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 231837..242235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OWO33_RS01370 - 232114..234120 (+) 2007 WP_000537329.1 DUF859 family phage minor structural protein -
  OWO33_RS01375 - 234146..234475 (+) 330 WP_000494204.1 DUF1366 domain-containing protein -
  OWO33_RS01380 - 234450..234662 (+) 213 WP_000698337.1 hypothetical protein -
  OWO33_RS01385 - 234675..234980 (+) 306 WP_000215496.1 hypothetical protein -
  OWO33_RS01390 - 234977..235312 (+) 336 WP_001001966.1 phage holin -
  OWO33_RS01395 - 235314..236501 (+) 1188 WP_000215268.1 peptidoglycan amidohydrolase family protein -
  OWO33_RS01400 prx 236658..236846 (+) 189 WP_000965190.1 hypothetical protein Regulator
  OWO33_RS01405 comYD 236837..237235 (+) 399 WP_024440007.1 competence type IV pilus minor pilin ComGD Machinery gene
  OWO33_RS01410 comGE 237207..237506 (+) 300 WP_000234804.1 competence type IV pilus minor pilin ComGE -
  OWO33_RS01415 comGF 237460..237921 (+) 462 WP_001874812.1 competence type IV pilus minor pilin ComGF -
  OWO33_RS01420 comGG 237899..238270 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG -
  OWO33_RS01425 comYH 238385..239359 (+) 975 WP_001008574.1 N-6 DNA methylase Machinery gene
  OWO33_RS01430 - 239391..240584 (+) 1194 WP_000047534.1 acetate kinase -
  OWO33_RS01435 - 240736..240942 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  OWO33_RS01440 - 241001..241138 (+) 138 WP_001865900.1 hypothetical protein -
  OWO33_RS01445 - 241179..241634 (+) 456 WP_000905673.1 hypothetical protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15290.63 Da        Isoelectric Point: 9.5034

>NTDB_id=1159692 OWO33_RS01405 WP_024440007.1 236837..237235(+) (comYD) [Streptococcus agalactiae isolate MRI Z2-336]
MSIILVTLIESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENTYERLY
LPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1159692 OWO33_RS01405 WP_024440007.1 236837..237235(+) (comYD) [Streptococcus agalactiae isolate MRI Z2-336]
ATATCAATAATTTTAGTAACCTTGATTGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGACGTTAGTATTTTCAAC
ATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTTATAGAGATACTCAGA
AATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACTTATGAGAGACTTTAT
TTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTCAAGCTTGGCAAAAAT
TCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTAAGAAAGAAAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

52.756

96.212

0.508
  comYD Streptococcus mutans UA159

52.756

96.212

0.508
  comYD Streptococcus gordonii str. Challis substr. CH1

43.939

100

0.439
  comGD/cglD Streptococcus pneumoniae TIGR4

41.463

93.182

0.386
  comGD/cglD Streptococcus mitis SK321

41.463

93.182

0.386
  comGD/cglD Streptococcus pneumoniae Rx1

40.65

93.182

0.379
  comGD/cglD Streptococcus pneumoniae D39

40.65

93.182

0.379
  comGD/cglD Streptococcus pneumoniae R6

40.65

93.182

0.379
  comGD/cglD Streptococcus mitis NCTC 12261

40.65

93.182

0.379

Multiple sequence alignment