Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QOR61_RS09670 Genome accession   NZ_OX460960
Coordinates   1866035..1866547 (-) Length   170 a.a.
NCBI ID   WP_283572548.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-299     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1835435..1874866 1866035..1866547 within 0


Gene organization within MGE regions


Location: 1835435..1874866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR61_RS09445 - 1835435..1836154 (-) 720 WP_283572506.1 peptidoglycan amidohydrolase family protein -
  QOR61_RS09450 - 1836157..1836393 (-) 237 WP_283572507.1 phage holin -
  QOR61_RS09455 - 1836396..1836719 (-) 324 WP_283572508.1 hypothetical protein -
  QOR61_RS09460 - 1836731..1836847 (-) 117 WP_283572509.1 CD1375 family protein -
  QOR61_RS09465 - 1836870..1837247 (-) 378 WP_283572510.1 DUF1366 domain-containing protein -
  QOR61_RS09470 - 1837257..1839284 (-) 2028 WP_283572511.1 DUF859 family phage minor structural protein -
  QOR61_RS09475 - 1839296..1842700 (-) 3405 WP_283572512.1 hypothetical protein -
  QOR61_RS09480 - 1842700..1844148 (-) 1449 WP_283572513.1 distal tail protein Dit -
  QOR61_RS09485 - 1844145..1847951 (-) 3807 WP_283572514.1 tape measure protein -
  QOR61_RS09490 - 1847971..1848558 (-) 588 WP_283572515.1 Gp15 family bacteriophage protein -
  QOR61_RS09495 - 1848561..1848959 (-) 399 WP_283572516.1 hypothetical protein -
  QOR61_RS09500 - 1848984..1849439 (-) 456 WP_283572517.1 phage tail protein -
  QOR61_RS09505 - 1849442..1849849 (-) 408 WP_283572518.1 minor capsid protein -
  QOR61_RS09510 - 1849850..1850206 (-) 357 WP_283572519.1 minor capsid protein -
  QOR61_RS09515 - 1850206..1850532 (-) 327 WP_283572520.1 putative minor capsid protein -
  QOR61_RS09520 - 1850522..1850911 (-) 390 WP_283572521.1 hypothetical protein -
  QOR61_RS09525 - 1850952..1851194 (-) 243 WP_283572522.1 hypothetical protein -
  QOR61_RS09530 - 1851206..1852090 (-) 885 WP_283572523.1 phage capsid protein -
  QOR61_RS09535 - 1852113..1852691 (-) 579 WP_283572524.1 phage scaffolding protein -
  QOR61_RS09540 - 1852829..1853998 (-) 1170 WP_283572525.1 phage minor capsid protein -
  QOR61_RS09545 - 1854097..1854357 (-) 261 WP_070030351.1 hypothetical protein -
  QOR61_RS09550 - 1854329..1855912 (-) 1584 WP_283572526.1 phage portal protein -
  QOR61_RS09555 - 1855924..1857237 (-) 1314 WP_283572527.1 PBSX family phage terminase large subunit -
  QOR61_RS09560 - 1857224..1857667 (-) 444 WP_283572528.1 stress-induced protein -
  QOR61_RS09565 - 1857766..1858164 (-) 399 WP_283572529.1 hypothetical protein -
  QOR61_RS09570 - 1858140..1859246 (-) 1107 WP_283572530.1 DUF4417 domain-containing protein -
  QOR61_RS09575 - 1859330..1859572 (-) 243 WP_283572531.1 hypothetical protein -
  QOR61_RS09580 - 1859629..1860009 (-) 381 WP_283572532.1 hypothetical protein -
  QOR61_RS09585 - 1859996..1860175 (-) 180 WP_283572533.1 hypothetical protein -
  QOR61_RS09590 - 1860211..1860513 (-) 303 WP_283572534.1 DUF6275 family protein -
  QOR61_RS09595 - 1860510..1860728 (-) 219 WP_283572535.1 hypothetical protein -
  QOR61_RS09600 - 1860730..1861113 (-) 384 WP_283572536.1 YopX family protein -
  QOR61_RS09605 - 1861106..1861291 (-) 186 WP_283572537.1 hypothetical protein -
  QOR61_RS09610 - 1861288..1861683 (-) 396 WP_283572538.1 hypothetical protein -
  QOR61_RS09615 - 1861673..1862182 (-) 510 WP_283572539.1 DUF1642 domain-containing protein -
  QOR61_RS09620 - 1862175..1862414 (-) 240 WP_283572540.1 hypothetical protein -
  QOR61_RS09625 - 1862487..1862735 (-) 249 WP_283572541.1 hypothetical protein -
  QOR61_RS09630 - 1862722..1863207 (-) 486 WP_283572542.1 class I SAM-dependent methyltransferase -
  QOR61_RS09635 - 1863194..1863418 (-) 225 WP_283572543.1 hypothetical protein -
  QOR61_RS09640 - 1863418..1863744 (-) 327 WP_283572544.1 DUF1372 family protein -
  QOR61_RS09645 - 1863914..1864087 (-) 174 WP_176724768.1 hypothetical protein -
  QOR61_RS09650 - 1864087..1864335 (-) 249 WP_283572545.1 hypothetical protein -
  QOR61_RS09655 - 1864388..1865122 (-) 735 WP_283572546.1 hypothetical protein -
  QOR61_RS09660 - 1865124..1865546 (-) 423 WP_070030336.1 hypothetical protein -
  QOR61_RS09665 - 1865539..1866021 (-) 483 WP_283572547.1 helix-turn-helix transcriptional regulator -
  QOR61_RS09670 ssbA 1866035..1866547 (-) 513 WP_283572548.1 single-stranded DNA-binding protein Machinery gene
  QOR61_RS09675 - 1866540..1866722 (-) 183 WP_283572549.1 hypothetical protein -
  QOR61_RS09680 - 1866719..1867252 (-) 534 WP_070030332.1 MazG-like family protein -
  QOR61_RS09685 - 1867254..1868285 (-) 1032 WP_283572550.1 DUF1351 domain-containing protein -
  QOR61_RS09690 - 1868301..1869029 (-) 729 WP_283572551.1 ERF family protein -
  QOR61_RS09695 - 1869035..1869310 (-) 276 WP_283572552.1 hypothetical protein -
  QOR61_RS09700 - 1869303..1870244 (-) 942 WP_283572553.1 DnaD domain protein -
  QOR61_RS09705 - 1870241..1870519 (-) 279 WP_283572554.1 hypothetical protein -
  QOR61_RS09710 - 1870742..1870918 (-) 177 WP_176724766.1 hypothetical protein -
  QOR61_RS09715 - 1870964..1871179 (-) 216 WP_283572555.1 helix-turn-helix transcriptional regulator -
  QOR61_RS09720 - 1871364..1872119 (+) 756 WP_283572556.1 XRE family transcriptional regulator -
  QOR61_RS09725 - 1872124..1872306 (+) 183 WP_283572557.1 hypothetical protein -
  QOR61_RS09730 - 1872308..1872898 (+) 591 WP_283572558.1 sporulation protein -
  QOR61_RS09735 - 1872923..1873330 (+) 408 WP_283572559.1 hypothetical protein -
  QOR61_RS09740 - 1873335..1873652 (+) 318 WP_283572560.1 hypothetical protein -
  QOR61_RS09745 - 1873775..1874866 (+) 1092 WP_283572561.1 site-specific integrase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19318.17 Da        Isoelectric Point: 4.9007

>NTDB_id=1159329 QOR61_RS09670 WP_283572548.1 1866035..1866547(-) (ssbA) [Streptococcus agalactiae isolate MRI Z2-299]
MINNVVLVGRLTKDAELRYTPSQVAVATFTLAVNRRFKEQNGEREADFINCVIWQKSAENLANWCKKGSLIGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRKDNNQGAPQNNQGYQQPNNNYQQPQNNQSYQQQSSQGFNQGQQGSFFDGMTTNP
VDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1159329 QOR61_RS09670 WP_283572548.1 1866035..1866547(-) (ssbA) [Streptococcus agalactiae isolate MRI Z2-299]
ATGATTAATAACGTTGTTTTAGTTGGTCGATTGACCAAGGATGCAGAGTTGCGATATACACCAAGTCAGGTAGCAGTTGC
AACATTCACATTGGCGGTTAATCGTCGATTTAAAGAGCAAAATGGTGAACGTGAGGCAGACTTTATCAACTGTGTTATAT
GGCAAAAATCGGCTGAAAATCTAGCAAATTGGTGTAAAAAAGGTTCTTTAATCGGCATCACAGGTCGTATCCAAACTCGA
AACTATGAAAATCAACAGGGTCAGCGAGTTTATGTAACTGAGGTGGTTGCTGAGTCTTTTCAATTGCTTGAGAGCCGAAA
AGATAACAACCAAGGAGCACCTCAGAATAATCAAGGTTATCAACAACCTAATAATAATTATCAACAACCACAAAATAACC
AAAGTTATCAACAACAAAGCAGTCAAGGGTTTAACCAAGGTCAGCAAGGCAGTTTCTTTGATGGCATGACTACAAATCCA
GTTGACATCTCGGATGATGATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.606
  ssb Latilactobacillus sakei subsp. sakei 23K

57.062

100

0.594
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.622

70

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

62.353

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

52.991

68.824

0.365
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.991

68.824

0.365

Multiple sequence alignment