Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OM978_RS19215 Genome accession   NZ_OX352320
Coordinates   4124948..4125808 (+) Length   286 a.a.
NCBI ID   WP_264343967.1    Uniprot ID   -
Organism   Rheinheimera sp. MM224     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4119948..4130808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM978_RS19205 (JAMGFMIE_03857) - 4122157..4123332 (-) 1176 WP_264343964.1 FecR family protein -
  OM978_RS19210 (JAMGFMIE_03858) - 4123322..4124674 (-) 1353 WP_264343965.1 tetratricopeptide repeat protein -
  OM978_RS19215 (JAMGFMIE_03859) comM 4124948..4125808 (+) 861 WP_264343967.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OM978_RS19220 (JAMGFMIE_03860) - 4125881..4127677 (+) 1797 WP_264343969.1 hypothetical protein -
  OM978_RS19225 (JAMGFMIE_03861) - 4127767..4128132 (-) 366 WP_264343970.1 hypothetical protein -
  OM978_RS19230 (JAMGFMIE_03862) - 4128244..4129275 (+) 1032 WP_264343972.1 nucleotide kinase domain-containing protein -
  OM978_RS19235 (JAMGFMIE_03863) - 4129238..4130317 (-) 1080 WP_264343973.1 hypothetical protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 30503.18 Da        Isoelectric Point: 6.8219

>NTDB_id=1155321 OM978_RS19215 WP_264343967.1 4124948..4125808(+) (comM) [Rheinheimera sp. MM224]
MALALVHSRARSGLQAPLVTVEVHLSRGLPGFQLVGLPETSVKEAKDRVRSALINSGFEFPDHKITVNLAPADLPKEGGR
FDLAIALGILHASGQLQADLSGYEFFGELALSGEIRSIVGEIPLALACKMAGHIAVFPLQNAVQAQQIPDMQLCGAEHLL
QLHAFLLHQQALPAIPAIPHTEAELYPDLAEVRGQAQAKRALEIAAAGEHNLLMFGPAGTGKSMLAQRLPGILPTLTDQE
ALETAAIYSVAAQPRTLQQWHQRPFRQPHHTCSAVALVGGGVNSTK

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1155321 OM978_RS19215 WP_264343967.1 4124948..4125808(+) (comM) [Rheinheimera sp. MM224]
ATGGCACTGGCCTTAGTTCACAGCAGAGCCCGCAGCGGTTTGCAGGCGCCGCTGGTCACAGTGGAGGTGCACCTGAGCCG
GGGTTTGCCTGGATTTCAGTTGGTAGGCTTACCTGAAACTTCTGTCAAAGAAGCCAAAGACAGAGTACGCAGTGCACTGA
TTAACAGTGGTTTTGAGTTTCCGGATCATAAAATTACCGTCAATCTGGCCCCTGCAGATCTGCCCAAAGAAGGCGGGCGT
TTTGATTTGGCGATAGCCCTTGGCATATTGCATGCGAGCGGTCAGCTACAAGCAGATTTATCCGGTTATGAGTTTTTTGG
TGAGCTGGCGTTGTCGGGTGAAATTCGTAGCATAGTCGGAGAAATTCCCTTAGCTTTGGCCTGTAAAATGGCTGGGCATA
TCGCCGTGTTTCCGTTACAAAATGCCGTGCAAGCGCAACAAATTCCAGATATGCAGCTCTGTGGTGCCGAACATTTGTTA
CAGCTGCACGCCTTTTTATTACACCAGCAGGCCTTACCTGCTATTCCGGCAATTCCACATACTGAAGCTGAACTTTATCC
GGATCTGGCCGAAGTGCGCGGTCAGGCTCAGGCGAAAAGAGCACTGGAAATTGCCGCAGCCGGTGAACACAACTTGCTGA
TGTTTGGACCTGCAGGCACAGGTAAATCTATGCTGGCACAACGTTTACCCGGCATTCTCCCGACATTAACGGATCAGGAA
GCATTAGAAACTGCTGCGATTTATTCTGTGGCAGCACAACCTCGTACTTTACAACAATGGCACCAGCGACCTTTTCGCCA
GCCTCACCACACCTGCTCCGCCGTCGCATTGGTAGGGGGTGGTGTGAATTCCACTAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.042

99.301

0.566
  comM Vibrio campbellii strain DS40M4

55.986

99.301

0.556
  comM Haemophilus influenzae Rd KW20

54.514

100

0.549
  comM Glaesserella parasuis strain SC1401

53.147

100

0.531
  comM Legionella pneumophila str. Paris

46.488

100

0.486
  comM Legionella pneumophila strain ERS1305867

46.488

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.637

100

0.451

Multiple sequence alignment