Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OOL12_RS00555 Genome accession   NZ_OX344719
Coordinates   100828..101442 (+) Length   204 a.a.
NCBI ID   WP_264717771.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST20190863 isolate ST20190863     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 95828..106442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL12_RS00535 - 96406..97383 (-) 978 WP_000379098.1 metal-dependent hydrolase -
  OOL12_RS00540 mutY 97535..98572 (+) 1038 WP_061732699.1 A/G-specific adenine glycosylase -
  OOL12_RS00545 - 98874..99416 (+) 543 WP_000251253.1 DUF402 domain-containing protein -
  OOL12_RS00550 - 99797..100527 (+) 731 Protein_110 ABC transporter transmembrane domain-containing protein -
  OOL12_RS00555 rcrQ 100828..101442 (+) 615 WP_264717771.1 ABC transporter ATP-binding protein Regulator
  OOL12_RS00560 - 101451..101543 (+) 93 WP_001791878.1 hypothetical protein -
  OOL12_RS00565 - 101633..102727 (-) 1095 WP_001236371.1 FUSC family protein -
  OOL12_RS00570 - 103020..104309 (-) 1290 WP_001011598.1 glutamate-1-semialdehyde 2,1-aminomutase -
  OOL12_RS00575 bcp 104390..104845 (+) 456 WP_000939521.1 thioredoxin-dependent thiol peroxidase -
  OOL12_RS00580 - 104851..105801 (+) 951 WP_000869455.1 phosphoglycerate dehydrogenase -
  OOL12_RS00585 perR 105898..106344 (+) 447 WP_000110011.1 peroxide-responsive transcriptional repressor PerR -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22424.49 Da        Isoelectric Point: 5.0617

>NTDB_id=1154815 OOL12_RS00555 WP_264717771.1 100828..101442(+) (rcrQ) [Staphylococcus aureus strain ST20190863 isolate ST20190863]
MSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMA
NAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH
RLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQNL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1154815 OOL12_RS00555 WP_264717771.1 100828..101442(+) (rcrQ) [Staphylococcus aureus strain ST20190863 isolate ST20190863]
ATGAGTGGTGGTGGTAAATCAACATTAATTAACTTAATACCGAGATTTTACGATGTAACTTCTGGGCAAATTTTAATAGA
TGGTCACAACATTAAAGATTTTTTAACGGGAAGTTTAAGAAATCAAATAGGATTGGTGCAACAGGATAATATTTTATTCT
CTGATACAGTTAAGGAAAATATTTTACTTGGTCGTCCAACAGCAACAGATGAAGAAGTAGTTGAAGCGGCGAAAATGGCT
AATGCACATGACTTTATTATGAACTTGCCACAGGGATATGACACTGAAGTAGGTGAACGAGGTGTTAAATTATCAGGTGG
TCAAAAACAAAGATTATCGATTGCTAGAATATTTTTAAATAATCCGCCAATTCTTATCTTGGATGAAGCAACAAGTGCAC
TTGATTTAGAAAGTGAATCCATTATTCAAGAAGCATTAGATGTGTTGAGTAAAGATCGAACGACACTTATCGTAGCGCAT
CGCTTGTCCACTATTACACATGCTGACAAAATTGTCGTAATTGAAAATGGACATATTGTTGAAACAGGTACGCATCGTGA
ATTGATTGCAAAACAAGGTGCTTACGAGCATTTATATAGCATTCAAAACTTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(2-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

48.756

98.529

0.48
  rcrP Streptococcus mutans UA159

44.5

98.039

0.436
  comA/nlmT Streptococcus mutans UA159

41.791

98.529

0.412
  comA Streptococcus gordonii str. Challis substr. CH1

40.201

97.549

0.392
  comA Streptococcus pneumoniae Rx1

39.698

97.549

0.387
  comA Streptococcus pneumoniae D39

39.698

97.549

0.387
  comA Streptococcus pneumoniae R6

39.698

97.549

0.387
  comA Streptococcus pneumoniae TIGR4

39.196

97.549

0.382
  comA Streptococcus mitis SK321

39.196

97.549

0.382
  comA Streptococcus mitis NCTC 12261

38.191

97.549

0.373

Multiple sequence alignment