Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OGY80_RS08850 Genome accession   NZ_OX336253
Coordinates   1828925..1830421 (-) Length   498 a.a.
NCBI ID   WP_263340712.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q5346     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1823925..1835421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS08825 comE 1825141..1825428 (+) 288 WP_263337731.1 helix-hairpin-helix domain-containing protein Machinery gene
  OGY80_RS08830 comP 1825611..1826105 (+) 495 WP_263338696.1 type IV pilin protein Machinery gene
  OGY80_RS08835 - 1826181..1827005 (-) 825 WP_263340703.1 undecaprenyl-diphosphate phosphatase -
  OGY80_RS08840 dsbA1 1827050..1827691 (-) 642 WP_263340706.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  OGY80_RS08845 - 1827703..1828770 (-) 1068 WP_263340710.1 SPOR domain-containing protein -
  OGY80_RS08850 comM 1828925..1830421 (-) 1497 WP_263340712.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OGY80_RS08855 - 1830435..1830755 (-) 321 WP_003684455.1 accessory factor UbiK family protein -
  OGY80_RS08860 metK 1830865..1832034 (-) 1170 WP_070583688.1 methionine adenosyltransferase -
  OGY80_RS08865 - 1832427..1833305 (+) 879 WP_263340721.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53819.91 Da        Isoelectric Point: 7.5675

>NTDB_id=1154768 OGY80_RS08850 WP_263340712.1 1828925..1830421(-) (comM) [Neisseria sp. Marseille-Q5346]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQINPEKLAQYEFAGELALSGLLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGIAVYGARSL
GEVAAHLNGIEPLTQTECKLTHRPSEQSKIPDLADVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPESVARYRNKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSATVLERVTAARKIQYGRQGKVNAELSVSELDCKARIQKEAQEALGTMLEKLSLSARSFHRIMRVARTLADLAGD
EEVSKTHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1154768 OGY80_RS08850 WP_263340712.1 1828925..1830421(-) (comM) [Neisseria sp. Marseille-Q5346]
ATGTCGCTTGCTTTGGTTTACAGCCGCGCCTTAAGCGGCATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCTTGCCACATTTCAATATTGTCGGTTTGCCCGATACTGAAGTCAAAGAAAGCCGCGACCGTGTGCGTGCCGCCATCA
TCCAAAGCGGCTTCGACTTTCCCGCCAAGAAAATTACCGTTAACCTCGCACCGGCCGACCTCCCAAAAGAATCCGGCCGT
TTCGATTTGCCGATTGCCTTAGGCATTCTTGCCGCATCGGGACAAATCAATCCTGAAAAACTCGCGCAATATGAGTTTGC
CGGAGAATTGGCACTGTCCGGCCTGCTGCGTCCCGTACGCGGCGCGCTGGCTATGGCATGGCAGGGAATGCAGGCTGGCC
GTTCGTTCGTATTGCCGCAAGAAAATGCCGAACAGGCTGCCGTTATGCGCGGTATCGCGGTTTATGGTGCGCGTTCTTTA
GGCGAAGTGGCCGCACATTTAAACGGTATCGAACCGTTGACACAAACTGAATGCAAACTGACACACAGGCCGTCTGAACA
AAGTAAAATACCTGATTTAGCCGATGTCAAAGGCCAACATACCGCTCGCCTTGCTTTGGAAATCGCAGCGGCAGGCGGAC
ACAGCCTGCTGATGATGGGTCCTCCGGGTACGGGCAAATCCATGCTTTCGCAACGTTTGCCCGGCATCCTTCCGCCTTTG
ACCGAAGACGAATTAGTCGAAGTATGGGCATTGCGTTCGCTCCTGCCCAACCATCAACAGCAACTCGACAGCAACCGTCC
TTTCCGCAGCCCTCATCACAGCGCCAGCTCGGCTGCCATGGTAGGTGGCGGTTCAGACCCGCGTCCGGGCGAAATTTCAT
TGGCGCATCACGGTGTGTTGTTTTTAGACGAATTACCCGAGTTTGACCGTAAAGTATTAGAAGTATTGCGCGAACCTTTG
GAAAACGGCGAAATCCATATTTCCCGCGCCGCACGCCAAGCAGTTTATCCGGCCAAGTTCCAACTTGTCGCCGCCATGAA
CCCCTGCCCTTGTGGCTATCTTGGCCATCCGTCCAAACCTTGCCGCTGCACGCCTGAAAGCGTTGCCCGCTACCGCAACA
AAATTTCAGGGCCATTGCTCGACCGTATTGATTTAACCATCGAAGTACCCAGCCTTTCCGCTGCCGAGTTAATGCAACAA
GAAGCAGGCGAATCCAGTGCCACCGTATTGGAACGAGTTACCGCAGCGCGCAAAATCCAATACGGCCGACAAGGCAAAGT
TAATGCCGAATTGAGTGTCAGCGAGCTCGATTGCAAAGCCCGCATCCAAAAAGAAGCGCAAGAAGCCTTGGGAACCATGC
TTGAAAAACTGTCCCTTTCCGCCCGAAGTTTCCACCGTATCATGCGCGTCGCCCGTACGCTGGCCGATTTGGCAGGCGAT
GAAGAAGTCAGCAAAACCCATGTGATGAAGGCCATCGGCTTCCGTCGCGCCCTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.789

100

0.532
  comM Vibrio campbellii strain DS40M4

51.8

100

0.52
  comM Haemophilus influenzae Rd KW20

49.9

100

0.5
  comM Glaesserella parasuis strain SC1401

49.004

100

0.494
  comM Legionella pneumophila str. Paris

46.875

100

0.482
  comM Legionella pneumophila strain ERS1305867

46.875

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.96

100

0.446

Multiple sequence alignment