Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   OGY80_RS08840 Genome accession   NZ_OX336253
Coordinates   1827050..1827691 (-) Length   213 a.a.
NCBI ID   WP_263340706.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q5346     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1822050..1832691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS08825 comE 1825141..1825428 (+) 288 WP_263337731.1 helix-hairpin-helix domain-containing protein Machinery gene
  OGY80_RS08830 comP 1825611..1826105 (+) 495 WP_263338696.1 type IV pilin protein Machinery gene
  OGY80_RS08835 - 1826181..1827005 (-) 825 WP_263340703.1 undecaprenyl-diphosphate phosphatase -
  OGY80_RS08840 dsbA1 1827050..1827691 (-) 642 WP_263340706.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  OGY80_RS08845 - 1827703..1828770 (-) 1068 WP_263340710.1 SPOR domain-containing protein -
  OGY80_RS08850 comM 1828925..1830421 (-) 1497 WP_263340712.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OGY80_RS08855 - 1830435..1830755 (-) 321 WP_003684455.1 accessory factor UbiK family protein -
  OGY80_RS08860 metK 1830865..1832034 (-) 1170 WP_070583688.1 methionine adenosyltransferase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23757.58 Da        Isoelectric Point: 9.9901

>NTDB_id=1154767 OGY80_RS08840 WP_263340706.1 1827050..1827691(-) (dsbA1) [Neisseria sp. Marseille-Q5346]
MKQRMKQTIAALSLSLLSLSAQAATEGVDYTVLSRPIPQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMPEMLGLAKVAAAVNLSGLKYQANPVIFKAVYEQKINLADTNVFRSWVGKQTSFESKKLLQAYNSPAAASAAAKM
QQLTETYRIENTPTVIVGGKYKVNFNGSDWKVGMKTIDDLIVKVRREQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1154767 OGY80_RS08840 WP_263340706.1 1827050..1827691(-) (dsbA1) [Neisseria sp. Marseille-Q5346]
ATGAAGCAGCGTATGAAACAAACTATTGCCGCACTCAGCCTGAGCCTGCTCAGTCTGAGTGCACAGGCTGCTACCGAAGG
CGTGGACTATACTGTCCTCAGTCGCCCTATCCCGCAGCAACAAGCCGGCAAAATTGAAGTGCTTGAGTTTTTCGGCTACT
TCTGCGTTCATTGTTACCATCTCGATCCGGTTTTGTTGCAACACAGCAAAACCTTCGCTAAAGATGTTTCCTTACGGACA
GAGCACGTCGTTTGGATGCCTGAAATGTTGGGTTTGGCCAAGGTTGCCGCAGCCGTTAATCTTTCAGGTTTGAAATATCA
AGCCAATCCAGTCATCTTCAAAGCAGTTTACGAACAAAAAATCAACCTGGCCGATACCAATGTATTCCGCTCATGGGTGG
GTAAACAAACGAGTTTTGAAAGTAAAAAACTGCTTCAAGCCTACAACAGTCCTGCTGCCGCATCGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATTGTCGGTGGTAAATACAAAGTCAATTTCAATGG
TAGCGACTGGAAAGTCGGTATGAAAACCATAGATGACCTCATCGTCAAAGTCCGTCGCGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

59.358

87.793

0.521
  dsbA2 Neisseria meningitidis MC58

59.016

85.915

0.507

Multiple sequence alignment