Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NB068_RS09905 Genome accession   NZ_OW969598
Coordinates   1981578..1983773 (-) Length   731 a.a.
NCBI ID   WP_250314842.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1976578..1988773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS09880 - 1976974..1977438 (-) 465 WP_250314837.1 transcriptional regulator NrdR -
  NB068_RS09885 - 1977466..1978308 (-) 843 WP_250314838.1 class II glutamine amidotransferase -
  NB068_RS09890 - 1979429..1979653 (+) 225 WP_250314839.1 hypothetical protein -
  NB068_RS09895 aroB 1979828..1980907 (-) 1080 WP_250314840.1 3-dehydroquinate synthase -
  NB068_RS09900 - 1980919..1981431 (-) 513 WP_250314841.1 shikimate kinase -
  NB068_RS09905 pilQ 1981578..1983773 (-) 2196 WP_250314842.1 type IV pilus secretin PilQ Machinery gene
  NB068_RS09910 pilP 1983791..1984342 (-) 552 WP_250314843.1 pilus assembly protein PilP Machinery gene
  NB068_RS09915 pilO 1984360..1985028 (-) 669 WP_250314844.1 type 4a pilus biogenesis protein PilO -
  NB068_RS09920 pilN 1985029..1985628 (-) 600 WP_250314845.1 PilN domain-containing protein Machinery gene
  NB068_RS09925 - 1985631..1986740 (-) 1110 WP_250314846.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 731 a.a.        Molecular weight: 79691.34 Da        Isoelectric Point: 9.8199

>NTDB_id=1153556 NB068_RS09905 WP_250314842.1 1981578..1983773(-) (pilQ) [Neisseria sp. Marseille-Q6792]
MNTKLTKIISGLFIATAAFQTASAGNITDIKVSSLPNKQKIIKVSFDKEVVSPTGFVTSSPARIALDFEQTGISMDQQVL
EYADSLLNKISAAQNSNRARLVLNLNKPSQYNTEVRGNEVWILINESSDTTSAPVRAPAQTVPRTQPSAPFSESVVSVSA
PFSPAAAQQTAAMPAKQTNIDFRKDSKNTGIVELSALGFSGQPDIRQQRDRVIVTLKNHTLTTAQQRSLDVADFKTPVQN
VTLRRINNDTQLIIKMTGNWEFINKSVSAGRFTFQILPKKQDLESSGLSNTPKTFKGRKISLDFQDVEVRTILQILAKES
DTNIVASDTVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIINIAPRDELLAKDKAFLQAEKEIAELGSLYSQNFQL
KYKNVEEFRKILRLDEIDSTNSRNTLLSNRGSALIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQVMIEARIVEATDG
FARDLGVKFGYGGTNRQTAWGFNSGSGGISAANNGGTGGNTGASSGRWSVNTNINLPVAAAANSIALVRALSSGALNLEL
SASEQLSKTKTLANPRVLTQNRQEAKIESGTEIPYQDTSTSGSSTSTTTTFKKAVLGLVVTPNITPDGQIIMNVKINKDT
PIDCRVKNEATKCIQTKNLDTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGDIPVIGNLFKTRQNSQSRRELLIFITPR
IMDTVGSNLRY

Nucleotide


Download         Length: 2196 bp        

>NTDB_id=1153556 NB068_RS09905 WP_250314842.1 1981578..1983773(-) (pilQ) [Neisseria sp. Marseille-Q6792]
ATGAATACAAAACTGACGAAAATTATTTCCGGTCTGTTTATCGCAACCGCTGCCTTTCAGACGGCATCGGCAGGAAACAT
CACAGATATTAAGGTTTCTTCCTTACCCAATAAACAAAAAATCATCAAAGTCAGCTTTGATAAAGAGGTTGTGAGCCCTA
CCGGTTTTGTAACCTCCTCACCTGCACGTATTGCTTTAGACTTTGAACAAACCGGCATTTCTATGGATCAGCAAGTTCTA
GAATATGCAGATTCCCTGTTAAACAAAATTAGCGCGGCTCAAAACAGCAACCGTGCGCGCTTAGTTCTTAATTTGAACAA
ACCAAGCCAGTACAATACCGAAGTACGAGGAAACGAAGTTTGGATTCTTATTAATGAATCTTCCGATACCACATCAGCTC
CTGTACGCGCACCCGCACAAACCGTACCGCGAACACAACCTTCCGCCCCATTTAGCGAATCCGTAGTATCCGTATCCGCA
CCATTTAGCCCTGCCGCCGCGCAACAAACGGCTGCAATGCCGGCAAAACAAACCAATATCGACTTCCGCAAAGACAGCAA
GAATACCGGTATAGTCGAATTGTCTGCCTTAGGTTTTTCCGGACAACCCGACATCCGCCAACAACGCGACCGAGTAATCG
TTACCCTGAAAAACCACACCCTGACAACTGCACAACAACGCAGCCTGGACGTGGCAGACTTCAAAACACCGGTACAAAAC
GTTACCCTGAGACGTATTAACAACGATACCCAGCTCATTATCAAAATGACCGGTAACTGGGAATTCATCAACAAATCCGT
ATCTGCAGGACGTTTTACCTTTCAAATCCTGCCTAAAAAACAAGATCTCGAATCTAGCGGTTTAAGCAATACCCCAAAAA
CCTTCAAAGGCAGAAAAATCTCCCTTGACTTCCAAGATGTCGAAGTTCGCACTATCTTGCAAATCTTAGCAAAAGAATCC
GATACCAATATCGTTGCCAGTGATACTGTCAACGGTAAAATGACCCTCTCCCTTAAAGACGTACCTTGGGATCAGGCCCT
GGATCTGGTTATGCAGGCACGCAATCTGGATATGCGCCAACAAGGAAATATTATCAACATCGCACCCCGCGACGAACTGC
TTGCCAAAGATAAAGCCTTCCTACAGGCAGAAAAAGAAATTGCCGAACTCGGTTCCCTCTATTCTCAGAACTTCCAATTA
AAATATAAAAATGTGGAAGAGTTCCGCAAAATCCTTCGTTTGGATGAAATTGACAGCACCAACTCACGCAATACGCTTCT
AAGTAACCGCGGCAGTGCATTGATTGACCCTGCCACCAATACCCTGATTGTTACCGATACCCGCAGCGTCATTGAGAAAT
TCCGCAAACTGATTGACGAATTGGACGTACCTGCGCAACAAGTCATGATTGAAGCGCGTATCGTTGAAGCAACCGACGGT
TTCGCACGCGACTTGGGTGTAAAATTCGGTTACGGAGGCACCAACCGGCAAACCGCATGGGGATTCAACTCCGGAAGCGG
CGGGATTTCCGCAGCGAATAACGGCGGAACAGGCGGCAATACCGGAGCATCCAGCGGACGTTGGTCGGTCAACACCAACA
TCAACCTGCCGGTTGCCGCTGCCGCAAACAGCATCGCACTGGTACGCGCACTTTCGTCCGGTGCCCTGAACCTGGAACTG
TCAGCATCTGAGCAACTTTCCAAAACCAAAACGCTTGCTAATCCGCGCGTGCTGACCCAAAACCGTCAGGAAGCCAAAAT
CGAATCCGGTACGGAAATTCCTTACCAAGATACTTCAACCTCAGGTAGCAGCACCAGTACGACCACAACCTTCAAAAAAG
CCGTATTGGGCTTGGTTGTTACCCCGAATATCACTCCTGACGGTCAAATCATCATGAATGTCAAAATCAATAAAGACACT
CCGATTGACTGCCGTGTGAAAAACGAAGCAACCAAATGTATCCAAACCAAAAATCTGGATACTCAAGCAATGGTTGAAAA
CGGCGGCACATTGATTGTCGGCGGCATTTATGAAGAAGAAAACGGTAATACGCTGACCAAAATCCCCTTGTTGGGCGATA
TTCCCGTCATCGGCAACCTGTTCAAAACGCGCCAAAACAGCCAAAGCCGTCGCGAACTGCTGATTTTCATTACTCCGAGA
ATTATGGATACGGTCGGCAGCAACCTGCGCTATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(323-369)

Bacterial type II and III secretion system protein (Secretin)

(563-723)

Bacterial type II/III secretion system short domain (Secretin_N)

(396-467)

AMIN domain (AMIN)

(43-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

77.328

100

0.784
  pilQ Neisseria meningitidis MC58

72.265

100

0.777
  pilQ Neisseria meningitidis M1080

72.751

100

0.774

Multiple sequence alignment