Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NB068_RS09920 Genome accession   NZ_OW969598
Coordinates   1985029..1985628 (-) Length   199 a.a.
NCBI ID   WP_250314845.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1980029..1990628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS09900 - 1980919..1981431 (-) 513 WP_250314841.1 shikimate kinase -
  NB068_RS09905 pilQ 1981578..1983773 (-) 2196 WP_250314842.1 type IV pilus secretin PilQ Machinery gene
  NB068_RS09910 pilP 1983791..1984342 (-) 552 WP_250314843.1 pilus assembly protein PilP Machinery gene
  NB068_RS09915 pilO 1984360..1985028 (-) 669 WP_250314844.1 type 4a pilus biogenesis protein PilO -
  NB068_RS09920 pilN 1985029..1985628 (-) 600 WP_250314845.1 PilN domain-containing protein Machinery gene
  NB068_RS09925 - 1985631..1986740 (-) 1110 WP_250314846.1 type IV pilus biogenesis protein PilM -
  NB068_RS09930 - 1986893..1989289 (+) 2397 WP_250314847.1 penicillin-binding protein 1A -
  NB068_RS09935 yihA 1989409..1990038 (-) 630 WP_250314848.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22605.82 Da        Isoelectric Point: 8.3143

>NTDB_id=1153558 NB068_RS09920 WP_250314845.1 1985029..1985628(-) (pilN) [Neisseria sp. Marseille-Q6792]
MNNLIKINLLPYREEINKRKQQQFKTLMYGAVLIGLASVAGTYLFIDNMTNNQLERNALLETSIAHLDTELTEIQKLKQE
KDAFLLKKNKIEELQLKRLQAAKILDSLNETIPDNTYLTSLEAVTADSYRLNGRTSSDNRVANMMRAMPNTGIFNQPELL
SIKKNNSYQEFTLQATLQPIVKATGTTENPAQENKQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1153558 NB068_RS09920 WP_250314845.1 1985029..1985628(-) (pilN) [Neisseria sp. Marseille-Q6792]
ATGAATAATTTAATTAAAATCAACCTTCTTCCCTATAGGGAGGAAATCAACAAGCGCAAACAGCAACAATTCAAAACGCT
GATGTATGGTGCCGTATTAATTGGCCTCGCTTCCGTTGCGGGAACTTACCTGTTTATTGACAACATGACTAATAACCAGT
TGGAAAGAAATGCCCTTCTAGAAACCTCTATCGCACACTTAGATACCGAACTGACTGAAATCCAAAAACTAAAACAAGAG
AAAGATGCCTTTCTACTTAAGAAAAACAAAATTGAGGAGCTTCAGCTCAAACGTCTCCAGGCAGCAAAAATCCTTGATAG
TCTAAACGAGACCATTCCGGACAACACTTATCTGACTTCACTCGAAGCCGTTACTGCCGATTCTTACCGACTAAACGGTA
GAACGTCCAGCGACAACCGTGTTGCCAATATGATGAGAGCCATGCCCAATACCGGCATATTCAATCAACCTGAGCTATTG
AGTATTAAGAAAAATAATTCATACCAAGAATTTACCTTACAAGCAACATTGCAACCTATCGTAAAGGCAACAGGAACCAC
AGAAAACCCGGCTCAAGAAAACAAACAGGAGGCAAACTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

86.935

100

0.869

Multiple sequence alignment