Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NB068_RS09910 Genome accession   NZ_OW969598
Coordinates   1983791..1984342 (-) Length   183 a.a.
NCBI ID   WP_250314843.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1978791..1989342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS09890 - 1979429..1979653 (+) 225 WP_250314839.1 hypothetical protein -
  NB068_RS09895 aroB 1979828..1980907 (-) 1080 WP_250314840.1 3-dehydroquinate synthase -
  NB068_RS09900 - 1980919..1981431 (-) 513 WP_250314841.1 shikimate kinase -
  NB068_RS09905 pilQ 1981578..1983773 (-) 2196 WP_250314842.1 type IV pilus secretin PilQ Machinery gene
  NB068_RS09910 pilP 1983791..1984342 (-) 552 WP_250314843.1 pilus assembly protein PilP Machinery gene
  NB068_RS09915 pilO 1984360..1985028 (-) 669 WP_250314844.1 type 4a pilus biogenesis protein PilO -
  NB068_RS09920 pilN 1985029..1985628 (-) 600 WP_250314845.1 PilN domain-containing protein Machinery gene
  NB068_RS09925 - 1985631..1986740 (-) 1110 WP_250314846.1 type IV pilus biogenesis protein PilM -
  NB068_RS09930 - 1986893..1989289 (+) 2397 WP_250314847.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20440.98 Da        Isoelectric Point: 4.6512

>NTDB_id=1153557 NB068_RS09910 WP_250314843.1 1983791..1984342(-) (pilP) [Neisseria sp. Marseille-Q6792]
MKYYAILTSLLVLSACSQNSDELNEWMAQTRREAKAEIIPFQAPTLPVSPVYSPPQLTGLNAFDFHRMETAKKGENAPDT
NRVKETLEKFSLENIRYVGILKSDKKISGFVEAEGYVYTVGIGNYLGQNYGKIQDITENSIILNELIEDSTGNWVSRKAE
LLLQPSDKNTDTEQAAASAKEQN

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1153557 NB068_RS09910 WP_250314843.1 1983791..1984342(-) (pilP) [Neisseria sp. Marseille-Q6792]
ATGAAATATTACGCCATACTCACTAGCCTTTTGGTCCTATCTGCGTGCTCCCAAAATTCCGATGAACTAAACGAATGGAT
GGCTCAAACAAGGCGTGAAGCCAAAGCAGAAATCATACCTTTCCAAGCCCCAACCCTACCGGTTTCACCGGTATACAGCC
CCCCGCAACTTACAGGACTAAATGCATTTGACTTCCACCGCATGGAAACTGCCAAAAAAGGGGAAAATGCTCCCGATACA
AACCGTGTTAAAGAAACACTGGAAAAATTCAGCTTAGAAAACATACGTTATGTCGGCATCTTAAAATCCGACAAAAAAAT
ATCAGGTTTTGTTGAAGCTGAAGGTTATGTCTATACTGTCGGCATCGGCAACTATTTAGGGCAAAACTACGGTAAAATCC
AAGACATTACCGAAAACAGTATCATTTTGAACGAATTGATAGAAGACAGCACAGGCAACTGGGTCTCCCGCAAAGCAGAA
CTGCTGCTGCAACCTTCCGACAAAAATACCGATACTGAACAAGCGGCAGCATCTGCCAAAGAGCAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

82.514

100

0.825

Multiple sequence alignment