Detailed information    

insolico Bioinformatically predicted

Overview


Name   micA   Type   Regulator
Locus tag   NBW44_RS02850 Genome accession   NZ_OW724079
Coordinates   571108..571812 (+) Length   234 a.a.
NCBI ID   WP_250307130.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 566108..576812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS08590 - 566547..567302 (+) 756 WP_284346666.1 MucBP domain-containing protein -
  NBW44_RS02840 - 567494..569767 (-) 2274 WP_250307128.1 Xaa-Pro dipeptidyl-peptidase -
  NBW44_RS02845 mutY 569880..571043 (+) 1164 WP_250307129.1 A/G-specific adenine glycosylase -
  NBW44_RS02850 micA 571108..571812 (+) 705 WP_250307130.1 response regulator YycF Regulator
  NBW44_RS02855 micB 571805..573154 (+) 1350 WP_250307131.1 cell wall metabolism sensor histidine kinase VicK Regulator
  NBW44_RS02860 vicX 573156..573965 (+) 810 WP_250307132.1 MBL fold metallo-hydrolase Regulator
  NBW44_RS02865 - 574001..574348 (-) 348 WP_250307133.1 thioredoxin -
  NBW44_RS02870 - 574455..576173 (-) 1719 WP_250307134.1 phospho-sugar mutase -

Sequence


Protein


Download         Length: 234 a.a.        Molecular weight: 26962.91 Da        Isoelectric Point: 4.6707

>NTDB_id=1152592 NBW44_RS02850 WP_250307130.1 571108..571812(+) (micA) [Streptococcus sp. Marseille-Q3533]
MKKILIVDDEKPISDIIKFNMTKEGYDVVTAFNGREAIELFEAEKPDIIILDLMLPEIDGLEVAKTIRKTSSVPIIMLSA
KDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSEILSVDNQEVEAKLQSIQIGDLEILPDAYVAKKYGEELELT
HREFELLYHLATHIGQVITREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPDYILTRRGVGYYMRNND

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1152592 NBW44_RS02850 WP_250307130.1 571108..571812(+) (micA) [Streptococcus sp. Marseille-Q3533]
ATGAAAAAAATATTGATTGTAGATGATGAAAAACCAATCTCGGACATTATTAAGTTTAATATGACCAAAGAAGGTTACGA
TGTAGTAACTGCCTTTAATGGTCGTGAAGCTATTGAATTATTTGAAGCTGAAAAGCCAGATATTATTATTTTAGACTTAA
TGTTACCTGAGATTGATGGACTTGAAGTTGCTAAAACGATTCGGAAAACAAGTAGTGTGCCAATAATCATGCTTTCAGCA
AAAGATAGTGAGTTTGATAAGGTTATTGGACTAGAGCTTGGAGCTGATGACTATGTGACTAAGCCGTTTTCAAACCGTGA
ACTACAGGCCCGTGTTAAAGCTTTACTTCGTCGTTCAGAGATCTTATCAGTTGACAACCAAGAAGTAGAAGCAAAACTAC
AAAGTATTCAAATTGGTGATTTAGAAATTCTTCCAGACGCTTATGTTGCGAAAAAATATGGAGAAGAATTAGAATTGACA
CACCGTGAATTTGAACTTTTATATCACTTAGCGACGCATATTGGACAGGTCATTACTCGTGAACATCTGCTTGAAACTGT
TTGGGGTTATGATTATTTTGGTGATGTTCGTACTGTTGATGTAACCATTAGACGTTTGCGTGAAAAAATCGAAGACACAC
CAAGCAGACCAGATTACATTTTAACTCGTCGTGGTGTTGGATATTACATGAGAAATAATGATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

90.987

99.573

0.906

  vicR Streptococcus mutans UA159

79.574

100

0.799

  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.348

98.291

0.436

  covR Streptococcus salivarius strain HSISS4

44.348

98.291

0.436


Multiple sequence alignment