Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAK07_RS00615 Genome accession   NZ_OW150024
Coordinates   172763..173203 (+) Length   146 a.a.
NCBI ID   WP_305730925.1    Uniprot ID   -
Organism   Trichlorobacter ammonificans strain G1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 167763..178203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAK07_RS00595 (GEAMG1_0122) radA 168877..170226 (+) 1350 WP_305730921.1 DNA repair protein RadA Machinery gene
  RAK07_RS00600 (GEAMG1_0123) dksA 170318..170674 (+) 357 WP_305730922.1 RNA polymerase-binding protein DksA -
  RAK07_RS00605 (GEAMG1_0124) - 170699..172120 (+) 1422 WP_305730923.1 sensor histidine kinase -
  RAK07_RS00610 (GEAMG1_0125) - 172371..172598 (+) 228 WP_305730924.1 hypothetical protein -
  RAK07_RS00615 (GEAMG1_0126) ssb 172763..173203 (+) 441 WP_305730925.1 single-stranded DNA-binding protein Machinery gene
  RAK07_RS00620 (GEAMG1_0127) - 173271..174041 (+) 771 WP_305730926.1 glycoside hydrolase -
  RAK07_RS00625 (GEAMG1_0128) - 174143..174904 (-) 762 WP_305730927.1 uracil-DNA glycosylase -
  RAK07_RS00630 (GEAMG1_0129) - 174997..176778 (+) 1782 WP_305730928.1 ATP-binding cassette domain-containing protein -
  RAK07_RS00635 (GEAMG1_0130) greB 176770..177246 (-) 477 WP_305730929.1 transcription elongation factor GreB -
  RAK07_RS00640 (GEAMG1_0131) - 177251..177508 (-) 258 WP_305730930.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16210.95 Da        Isoelectric Point: 5.0346

>NTDB_id=1152231 RAK07_RS00615 WP_305730925.1 172763..173203(+) (ssb) [Trichlorobacter ammonificans strain G1]
MASLNKVMLIGNLGKDPEVRYTTSGQAVASFNLATSERYKNKQSGEWEEKTEWHRVTLWGKLAEIAGEYLAKGKTVYIEG
RLQTRKWTDRDGNDRYTTEIVGDRMQMLGGRNEGSAGGGRRGDAGGVADTAVSYDEPPFQDDDIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1152231 RAK07_RS00615 WP_305730925.1 172763..173203(+) (ssb) [Trichlorobacter ammonificans strain G1]
ATGGCCAGTCTCAATAAAGTCATGCTGATCGGCAACCTGGGTAAGGATCCCGAGGTGCGCTATACCACGTCGGGGCAGGC
GGTTGCCTCGTTCAACCTTGCCACCAGCGAACGCTACAAGAACAAGCAGAGCGGCGAGTGGGAGGAAAAGACCGAGTGGC
ACCGGGTAACGCTCTGGGGAAAGCTTGCCGAAATCGCCGGTGAATACCTTGCCAAGGGGAAGACCGTCTACATTGAAGGC
CGTCTGCAGACCCGCAAATGGACTGATCGCGACGGTAACGACCGTTATACCACGGAAATTGTCGGTGACCGGATGCAGAT
GCTGGGCGGCAGGAATGAGGGCTCCGCAGGGGGAGGCCGTCGCGGTGACGCGGGCGGGGTCGCTGATACCGCGGTCAGTT
ACGATGAGCCGCCGTTCCAGGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.107

100

0.644
  ssb Glaesserella parasuis strain SC1401

47.887

97.26

0.466
  ssb Neisseria meningitidis MC58

56.897

79.452

0.452
  ssb Neisseria gonorrhoeae MS11

56.897

79.452

0.452
  ssbA Bacillus subtilis subsp. subtilis str. 168

31.609

100

0.377

Multiple sequence alignment