Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RAK07_RS00595 Genome accession   NZ_OW150024
Coordinates   168877..170226 (+) Length   449 a.a.
NCBI ID   WP_305730921.1    Uniprot ID   -
Organism   Trichlorobacter ammonificans strain G1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 163877..175226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAK07_RS00580 (GEAMG1_0119) - 163968..164930 (-) 963 WP_305730918.1 glycosyltransferase family A protein -
  RAK07_RS00585 (GEAMG1_0120) - 164957..167353 (-) 2397 WP_305730919.1 FG-GAP-like repeat-containing protein -
  RAK07_RS00590 (GEAMG1_0121) - 167460..168653 (-) 1194 WP_305730920.1 FprA family A-type flavoprotein -
  RAK07_RS00595 (GEAMG1_0122) radA 168877..170226 (+) 1350 WP_305730921.1 DNA repair protein RadA Machinery gene
  RAK07_RS00600 (GEAMG1_0123) dksA 170318..170674 (+) 357 WP_305730922.1 RNA polymerase-binding protein DksA -
  RAK07_RS00605 (GEAMG1_0124) - 170699..172120 (+) 1422 WP_305730923.1 sensor histidine kinase -
  RAK07_RS00610 (GEAMG1_0125) - 172371..172598 (+) 228 WP_305730924.1 hypothetical protein -
  RAK07_RS00615 (GEAMG1_0126) ssb 172763..173203 (+) 441 WP_305730925.1 single-stranded DNA-binding protein Machinery gene
  RAK07_RS00620 (GEAMG1_0127) - 173271..174041 (+) 771 WP_305730926.1 glycoside hydrolase -
  RAK07_RS00625 (GEAMG1_0128) - 174143..174904 (-) 762 WP_305730927.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 47628.95 Da        Isoelectric Point: 6.6042

>NTDB_id=1152230 RAK07_RS00595 WP_305730921.1 168877..170226(+) (radA) [Trichlorobacter ammonificans strain G1]
MRQKTVFSCSQCGCQSPKWLGKCPDCGAWNSMTEERLTAVPAQAGRTAGERAAPVPIDEVPPQAEVRLPCGIGELDRVLG
GGLVPGSLVLIGGDPGIGKSTLLLQAMHHLAVAGDVLYVSGEESAAQTRLRGERLGLSGRPLLVLAENGLEEIVSRIEQV
KPRAVVIDSIQTVWTRTLESAPGSVSQVRESAGRLMVLAKGSGIPIFIVGHVTKDGAIAGPRVLEHMVDTVLYFEGDRGH
PYRILRAVKNRFGSTNEIGVFEMRAGGLDEVTNPSELFLSERPLDAPGSVVTASLEGSRPLLVEIQALVTPSSYGTPRRT
TIGVDSNRLALLVAVLEKKAGLHLGGQDIFLNVAGGARLGEPAADLAIMLAVASSHLDRPLPQQMVVFGEVGLAGEIRAI
TQPELRIAEAAKLGFRDCLLPGGNVRRLDACRLQVQGVATVQEALRFLD

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1152230 RAK07_RS00595 WP_305730921.1 168877..170226(+) (radA) [Trichlorobacter ammonificans strain G1]
GTGCGTCAAAAGACGGTGTTCAGTTGCAGCCAGTGTGGTTGCCAGAGCCCGAAGTGGTTGGGCAAGTGCCCGGACTGCGG
GGCCTGGAACAGTATGACGGAAGAACGGCTGACCGCCGTGCCGGCTCAGGCCGGCCGGACAGCCGGCGAGCGTGCGGCGC
CGGTGCCGATCGACGAGGTGCCGCCCCAGGCCGAGGTTCGCCTGCCCTGCGGAATCGGAGAGCTGGACCGGGTGCTGGGA
GGCGGGCTGGTTCCCGGCTCCCTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAATCAACGCTGTTGCTGCAGGCCAT
GCACCATCTGGCCGTCGCCGGCGATGTTCTCTACGTGTCCGGCGAAGAGTCGGCGGCCCAGACCCGGCTGCGGGGAGAAC
GCTTGGGGCTTTCCGGCAGGCCGCTTTTGGTGCTGGCGGAAAACGGGCTTGAGGAGATTGTTTCCCGGATCGAACAGGTG
AAGCCGCGGGCGGTGGTGATTGATTCGATCCAGACGGTCTGGACCCGCACGCTGGAGTCTGCGCCCGGCAGTGTCAGCCA
GGTGCGGGAATCGGCCGGCCGGCTGATGGTCCTGGCCAAGGGAAGCGGCATTCCGATTTTTATCGTGGGGCATGTCACCA
AGGATGGTGCCATTGCCGGCCCCCGGGTGCTGGAGCATATGGTGGATACGGTGCTCTACTTCGAAGGGGACCGGGGGCAT
CCCTACCGTATCCTGCGGGCGGTGAAGAACCGCTTCGGCTCCACCAACGAGATCGGTGTCTTTGAAATGAGAGCAGGGGG
GCTGGACGAGGTGACCAACCCCTCGGAGCTGTTCCTGTCCGAGCGGCCGCTGGATGCCCCCGGTTCGGTGGTGACCGCCT
CCCTCGAGGGGAGCCGCCCGCTGCTGGTGGAAATTCAGGCGTTGGTGACCCCCAGCTCCTACGGGACGCCGCGGCGTACC
ACCATCGGTGTGGACAGTAATCGGCTGGCGCTGCTGGTGGCGGTGCTGGAGAAGAAGGCGGGGCTGCATCTGGGGGGGCA
GGATATTTTCCTGAATGTCGCCGGCGGCGCCCGGCTTGGCGAGCCGGCCGCCGACTTGGCCATCATGCTGGCGGTGGCGT
CCAGTCACCTCGATCGTCCTCTTCCCCAGCAGATGGTGGTGTTCGGTGAGGTGGGGCTGGCTGGTGAGATACGGGCCATT
ACCCAGCCGGAGCTCCGGATTGCGGAGGCAGCCAAGCTGGGGTTCAGGGATTGTCTTCTGCCCGGCGGCAACGTGAGGCG
TCTGGATGCCTGCCGCCTGCAGGTGCAGGGAGTTGCAACGGTACAGGAGGCGCTACGCTTCCTTGACTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(339-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

AAA domain (AAA_25)

(77-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.637

100

0.57
  radA Streptococcus pneumoniae Rx1

53.468

99.555

0.532
  radA Streptococcus pneumoniae D39

53.468

99.555

0.532
  radA Streptococcus pneumoniae R6

53.468

99.555

0.532
  radA Streptococcus pneumoniae TIGR4

53.468

99.555

0.532
  radA Streptococcus mitis NCTC 12261

53.468

99.555

0.532
  radA Streptococcus mitis SK321

53.468

99.555

0.532

Multiple sequence alignment