Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   CKV85_RS08950 Genome accession   NZ_LT906454
Coordinates   1836321..1836983 (-) Length   220 a.a.
NCBI ID   WP_095123385.1    Uniprot ID   -
Organism   Streptococcus acidominimus strain NCTC11291     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1831321..1841983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV85_RS08945 (SAMEA4504048_01911) hpf 1835691..1836239 (-) 549 WP_017769993.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CKV85_RS08950 (SAMEA4504048_01912) comFC/cflB 1836321..1836983 (-) 663 WP_095123385.1 ComF family protein Machinery gene
  CKV85_RS08955 (SAMEA4504048_01913) comFA/cflA 1836983..1838281 (-) 1299 WP_095123387.1 DEAD/DEAH box helicase Machinery gene
  CKV85_RS08960 (SAMEA4504048_01914) - 1838329..1838955 (+) 627 WP_095123389.1 YigZ family protein -
  CKV85_RS08965 (SAMEA4504048_01915) cysK 1839051..1839971 (+) 921 WP_095123391.1 cysteine synthase A -
  CKV85_RS08970 (SAMEA4504048_01916) - 1840246..1841109 (+) 864 WP_095122103.1 IS982 family transposase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25670.56 Da        Isoelectric Point: 9.0157

>NTDB_id=1147499 CKV85_RS08950 WP_095123385.1 1836321..1836983(-) (comFC/cflB) [Streptococcus acidominimus strain NCTC11291]
MQCLNCQRRMTSKSLFSNIFILKKEKDGVCQECQVAFERISNDHCPYCYKDGNKTICHDCQIWLTRGYDVQHKALYTYNQ
AMKDYFSRFKFQGDYLLAGLFSSDLRQCLKAYKDYTIVPIPLSNNRLKTRQFNQVESLLEKSGIRYLSLLTKIESQAQSS
KTREERLATTQPFRIKETQTLPSKILLIDDIYTTGTTIFLAHQKLKEHGVEEIISFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1147499 CKV85_RS08950 WP_095123385.1 1836321..1836983(-) (comFC/cflB) [Streptococcus acidominimus strain NCTC11291]
ATGCAATGCCTTAACTGTCAAAGACGTATGACATCAAAATCACTGTTTTCTAATATTTTTATTCTCAAAAAGGAGAAGGA
TGGTGTTTGCCAAGAGTGTCAAGTTGCTTTCGAAAGAATTTCAAATGATCATTGTCCTTATTGCTATAAAGACGGTAATA
AAACTATCTGCCATGATTGTCAAATCTGGCTAACGAGAGGCTACGATGTCCAACATAAAGCCCTATATACCTACAATCAA
GCAATGAAGGATTACTTTTCACGATTTAAATTTCAAGGAGATTATTTATTAGCCGGCTTGTTTTCTTCTGATCTTAGACA
GTGTTTAAAAGCATATAAAGATTACACAATTGTGCCCATTCCTCTGAGTAATAACCGTTTAAAGACGCGGCAGTTTAATC
AAGTAGAATCACTATTAGAGAAGTCAGGGATAAGATATCTTTCTTTGTTAACAAAAATAGAAAGTCAAGCACAATCATCA
AAAACAAGAGAAGAACGACTGGCAACAACACAGCCATTCCGAATCAAAGAGACACAAACACTACCTTCTAAAATTTTATT
AATTGATGACATCTATACGACCGGAACGACGATTTTTCTAGCTCATCAGAAACTAAAAGAGCATGGTGTAGAAGAGATAA
TAAGTTTTAGTTTAGCAAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae TIGR4

50

100

0.5
  comFC/cflB Streptococcus pneumoniae Rx1

50

100

0.5
  comFC/cflB Streptococcus pneumoniae D39

50

100

0.5
  comFC/cflB Streptococcus pneumoniae R6

50

100

0.5
  comFC/cflB Streptococcus mitis SK321

49.545

100

0.495
  comFC Bacillus subtilis subsp. subtilis str. 168

35.242

100

0.364

Multiple sequence alignment