Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   CKV85_RS01790 Genome accession   NZ_LT906454
Coordinates   366154..367653 (+) Length   499 a.a.
NCBI ID   WP_095121690.1    Uniprot ID   -
Organism   Streptococcus acidominimus strain NCTC11291     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 361154..372653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV85_RS01775 (SAMEA4504048_00372) pbp3 361707..362936 (-) 1230 WP_095121685.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  CKV85_RS01780 (SAMEA4504048_00373) - 362991..363854 (-) 864 WP_095121687.1 IS982 family transposase -
  CKV85_RS01785 (SAMEA4504048_00374) amiA 364115..366088 (+) 1974 WP_095121688.1 peptide ABC transporter substrate-binding protein Regulator
  CKV85_RS01790 (SAMEA4504048_00375) amiC 366154..367653 (+) 1500 WP_095121690.1 ABC transporter permease Regulator
  CKV85_RS01795 (SAMEA4504048_00376) amiD 367653..368579 (+) 927 WP_095121692.1 oligopeptide ABC transporter permease OppC Regulator
  CKV85_RS01800 (SAMEA4504048_00377) amiE 368588..369637 (+) 1050 WP_095121694.1 ABC transporter ATP-binding protein Regulator
  CKV85_RS01805 (SAMEA4504048_00378) amiF 369652..370581 (+) 930 WP_095121696.1 ATP-binding cassette domain-containing protein Regulator
  CKV85_RS12205 - 370657..370782 (+) 126 WP_269457197.1 hypothetical protein -
  CKV85_RS01810 (SAMEA4504048_00379) - 370889..372550 (+) 1662 WP_095121698.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56002.97 Da        Isoelectric Point: 9.9647

>NTDB_id=1147470 CKV85_RS01790 WP_095121690.1 366154..367653(+) (amiC) [Streptococcus acidominimus strain NCTC11291]
MKKYILMRILRSLVSIFLVTTLVYTIVYTMVPKSLIFKNDPNYNKMITTPDKKSDYENTVFERMGYIDYMTSKELQEEAS
KEYKNVTTEPTKANKNLYQKFLSASSGKWQLHQFEESKAFYATRNISIFERVWNFYSNLIVIDHPWKVKDSSNPNLERYI
RFENDPSAGPALVGSGTQHKYLIYFDGSFPFIHQNIIKLNLGVSYPTYANQPVTRIITQGQGKTLQNEVTFPSGSTRNSA
INIYSRTYLSPSKADSQAKRNFGKDDAYTATQNNYSEPSMLKNSFIIGVIGVFIAYALGLPIGMLMSRYKDGWFDRLSTG
TMTFMLALPSVATIYIIRFLGGLVGLPDSFPILGAASPLSYVLPSLVLGILSVPGIVVWFRRYMVDQQASDYVRFARSKG
LSEAEISQKHLFKNAMVPISNGIPSSIAMTIVGATLTEIIFAFPGMGKMLIDSVRAANNSMVVGLVFIFTVVSVFALLLG
DLLMTIFDPRIRLTSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1147470 CKV85_RS01790 WP_095121690.1 366154..367653(+) (amiC) [Streptococcus acidominimus strain NCTC11291]
ATGAAAAAATATATCTTAATGCGTATTTTGCGATCATTAGTTTCTATTTTTTTGGTAACAACACTGGTTTATACAATTGT
CTATACCATGGTACCGAAGAGTTTGATTTTCAAAAATGATCCTAACTATAACAAAATGATTACTACCCCAGACAAAAAAT
CGGATTATGAAAATACGGTTTTTGAAAGAATGGGATACATTGACTACATGACTTCTAAAGAACTTCAAGAAGAAGCTTCA
AAAGAGTATAAAAACGTCACAACAGAGCCGACAAAAGCTAATAAAAACTTGTATCAAAAGTTTTTATCGGCAAGTAGTGG
CAAGTGGCAACTACATCAATTTGAGGAAAGCAAGGCATTCTACGCAACACGCAACATTTCCATTTTTGAACGTGTTTGGA
ATTTCTATTCCAATTTAATCGTAATTGACCATCCTTGGAAGGTAAAAGATTCTTCAAACCCTAATCTGGAGCGCTATATT
CGTTTTGAAAATGATCCTTCAGCGGGTCCAGCTCTTGTAGGTTCAGGAACACAACATAAGTATTTGATTTATTTTGATGG
CAGTTTTCCTTTTATTCATCAAAATATTATCAAACTTAACTTAGGTGTATCTTACCCAACCTATGCCAATCAGCCTGTTA
CTCGTATTATCACACAAGGACAGGGTAAAACGCTTCAAAATGAAGTCACTTTCCCAAGCGGTAGCACTCGAAACTCCGCC
ATCAATATCTATTCAAGAACTTATTTATCACCTTCGAAAGCAGATTCTCAAGCCAAACGGAACTTTGGTAAAGATGATGC
CTACACAGCAACCCAAAACAATTACAGTGAACCGTCAATGCTGAAGAATTCATTCATTATCGGTGTGATTGGTGTGTTTA
TAGCTTATGCGTTAGGTTTACCGATTGGTATGTTAATGTCTCGCTACAAAGATGGTTGGTTTGATAGACTATCAACCGGA
ACAATGACCTTTATGTTGGCTTTGCCAAGTGTTGCGACAATCTATATTATCCGTTTCTTGGGTGGTCTTGTTGGTTTACC
AGATAGTTTCCCAATTTTAGGAGCAGCTAGTCCGCTGTCATATGTCTTGCCGTCTCTAGTTTTGGGGATTTTAAGTGTTC
CAGGTATCGTGGTTTGGTTCCGTCGTTATATGGTCGATCAGCAAGCTAGTGACTATGTTCGATTTGCTCGTTCAAAGGGG
CTTTCAGAAGCAGAAATCTCACAGAAGCATTTGTTTAAAAATGCTATGGTTCCGATTTCAAATGGTATTCCAAGCTCTAT
TGCTATGACAATTGTAGGAGCAACATTAACAGAAATTATTTTTGCCTTTCCAGGTATGGGTAAAATGTTAATTGACTCTG
TACGCGCTGCTAATAACTCAATGGTTGTTGGATTAGTCTTTATTTTTACAGTAGTATCTGTATTTGCCTTGTTACTAGGT
GATCTCTTGATGACTATTTTCGACCCACGTATTCGATTGACTTCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

61.523

100

0.615
  amiC Streptococcus thermophilus LMD-9

61.122

100

0.611
  amiC Streptococcus thermophilus LMG 18311

60.922

100

0.609

Multiple sequence alignment