Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   CKV85_RS01805 Genome accession   NZ_LT906454
Coordinates   369652..370581 (+) Length   309 a.a.
NCBI ID   WP_095121696.1    Uniprot ID   -
Organism   Streptococcus acidominimus strain NCTC11291     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 364652..375581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV85_RS01790 (SAMEA4504048_00375) amiC 366154..367653 (+) 1500 WP_095121690.1 ABC transporter permease Regulator
  CKV85_RS01795 (SAMEA4504048_00376) amiD 367653..368579 (+) 927 WP_095121692.1 oligopeptide ABC transporter permease OppC Regulator
  CKV85_RS01800 (SAMEA4504048_00377) amiE 368588..369637 (+) 1050 WP_095121694.1 ABC transporter ATP-binding protein Regulator
  CKV85_RS01805 (SAMEA4504048_00378) amiF 369652..370581 (+) 930 WP_095121696.1 ATP-binding cassette domain-containing protein Regulator
  CKV85_RS12205 - 370657..370782 (+) 126 WP_269457197.1 hypothetical protein -
  CKV85_RS01810 (SAMEA4504048_00379) - 370889..372550 (+) 1662 WP_095121698.1 peptide ABC transporter substrate-binding protein -
  CKV85_RS01815 (SAMEA4504048_00380) - 372665..373579 (+) 915 WP_017769008.1 ABC transporter permease -
  CKV85_RS01820 (SAMEA4504048_00381) - 373590..374621 (+) 1032 WP_095121700.1 ABC transporter permease -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35116.34 Da        Isoelectric Point: 5.9536

>NTDB_id=1147473 CKV85_RS01805 WP_095121696.1 369652..370581(+) (amiF) [Streptococcus acidominimus strain NCTC11291]
MSEKLVEIKNLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGDILFEGEKINGKKSRE
KERELIRKIQMIFQDPAASLNERATIDYIISEGLHNFWLYDNEEDRKAKVRKMISEVGLLPEHLTRYPHEFSGGQRQRIG
IARALVMRPDFVIADEPISALDVSVRAQVLNLLKELQKEFGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFK
NPIHPYTKSLLSAVPIPDPILERQKELVVYDPSQHDYDTEEPSMVEILPRHYVWGSPTEISKYKLENPI

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1147473 CKV85_RS01805 WP_095121696.1 369652..370581(+) (amiF) [Streptococcus acidominimus strain NCTC11291]
ATGTCAGAAAAATTAGTTGAAATCAAAAATTTAGAAATCTCCTTCGGAGAAGGAAAAAAGAAGTTTGTAGCGGTCAAAAA
TGCTAATTTTTTCATTAATAAAGGTGAAACATTTTCTCTAGTTGGTGAATCAGGATCAGGGAAGACCACAATTGGCCGTG
CCATTATCGGTTTAAACGATACAAGTGCAGGAGATATTTTATTTGAAGGTGAAAAAATCAACGGGAAGAAATCTCGGGAG
AAAGAAAGAGAACTCATTCGTAAAATCCAGATGATTTTCCAGGATCCTGCTGCAAGTTTGAATGAACGTGCAACAATCGA
TTACATTATCTCAGAAGGGCTTCATAACTTTTGGCTTTATGATAACGAGGAAGATCGTAAAGCTAAAGTAAGGAAAATGA
TTAGTGAAGTTGGTTTGTTGCCGGAACATTTAACGCGTTACCCACATGAATTTTCAGGAGGGCAACGACAACGTATTGGG
ATTGCTCGTGCTTTAGTTATGCGTCCGGATTTTGTTATTGCGGATGAACCTATATCTGCCCTAGACGTTTCAGTCCGTGC
GCAGGTTTTAAATCTATTAAAAGAACTTCAAAAAGAGTTTGGGTTGACTTATCTTTTTATTGCCCATGACCTATCAGTTG
TCAGATTTATTTCTGATCGTATTGCTGTAATTTACAAAGGTGTCATCGTTGAAGTAGCAGAAACGGAAGAGTTGTTCAAA
AATCCAATTCATCCTTACACGAAATCATTACTTTCAGCAGTTCCTATTCCAGATCCTATCTTAGAACGACAAAAGGAATT
GGTTGTTTATGATCCAAGTCAGCATGATTATGATACTGAAGAACCAAGTATGGTTGAAATTCTTCCAAGGCATTATGTCT
GGGGAAGTCCGACGGAAATATCTAAGTATAAGTTAGAAAATCCTATATAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

80.719

99.029

0.799
  amiF Streptococcus thermophilus LMD-9

80.392

99.029

0.796
  amiF Streptococcus thermophilus LMG 18311

80.065

99.029

0.793

Multiple sequence alignment