Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   CKV85_RS01785 Genome accession   NZ_LT906454
Coordinates   364115..366088 (+) Length   657 a.a.
NCBI ID   WP_095121688.1    Uniprot ID   -
Organism   Streptococcus acidominimus strain NCTC11291     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 362991..363866 364115..366088 flank 249


Gene organization within MGE regions


Location: 362991..366088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV85_RS01780 (SAMEA4504048_00373) - 362991..363854 (-) 864 WP_095121687.1 IS982 family transposase -
  CKV85_RS01785 (SAMEA4504048_00374) amiA 364115..366088 (+) 1974 WP_095121688.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 73131.80 Da        Isoelectric Point: 4.4152

>NTDB_id=1147469 CKV85_RS01785 WP_095121688.1 364115..366088(+) (amiA) [Streptococcus acidominimus strain NCTC11291]
MTSKKKLVALAGVALVSASVLAACGNKSDSKKSDSMSYSYVYTTDPKTLDYVTANGSETSELTANFVDGLLENDKYGNLI
PSLAKDWTVSEDGLTYTYKLRDDAYWYTADGEEYAPVTAEDFVTGLKHAADKKSDALYVVQDSINGLKDYVDGKEKDFKN
VGVKAVDENTVEYTLNKPESFWNSKTTYGILFPVNAEFLESKGDDFGSPTDPSSLLYNGAYTLSAITSKSSVEMTKNENY
WDADNVHITDVKLTYFDGSDPDSLFNNFKDGSYSFARLYPNQPSFKKASKEFGDNIYYSQQNASTFMYFFNVNRTANKMT
EKSPEQFEDTKEALQNKDFRQAVTFAFDRASWNSQVAGEDAKDKALRNTLVPPTFVQVDGKDFGDEVTKDLETLGDEWKG
INIKDAQNGLYDPEKAKVEFEKAKAELGSNVSYPIQIDTVVSQTDELTVQRAKSLKQSVESNLGKENVQINILEKSEEEY
LAAAYNAESAEQMDYDIIISGWSPDYLDPSSYLDIFSTAEGAASTMRLGIDTKDTALIEKVGLDKYQEQLDKASSITDDV
NARYTEYAKAQAWLSDSALVIPTISLGGTPGVTRTQPFSSPFSWVGNKGGTYIYKYQKVQDKPVTASEYEKALEKWKTKR
EQSNEKATKELADHVAK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=1147469 CKV85_RS01785 WP_095121688.1 364115..366088(+) (amiA) [Streptococcus acidominimus strain NCTC11291]
ATGACAAGTAAAAAGAAATTAGTGGCGTTAGCCGGTGTAGCACTTGTTTCTGCATCTGTTTTGGCAGCTTGTGGTAATAA
ATCAGATTCAAAGAAATCAGATAGTATGTCGTACAGTTATGTATATACGACAGATCCAAAGACTTTGGACTATGTGACTG
CTAATGGTTCAGAAACTAGTGAGCTTACAGCGAACTTTGTAGATGGTCTTTTAGAAAATGATAAGTATGGAAATCTTATT
CCATCATTAGCGAAAGATTGGACAGTTTCTGAGGACGGTTTAACTTACACTTATAAACTCCGTGATGACGCTTACTGGTA
TACTGCTGACGGTGAGGAGTATGCCCCAGTGACAGCAGAAGACTTTGTAACAGGTTTGAAGCATGCTGCTGATAAAAAGT
CTGATGCCCTCTATGTTGTTCAAGACTCTATCAACGGCTTAAAAGACTACGTTGATGGAAAAGAGAAAGATTTCAAAAAT
GTAGGTGTTAAAGCTGTTGATGAAAATACTGTTGAATATACCCTTAACAAGCCTGAAAGTTTCTGGAACTCTAAAACAAC
TTACGGTATTCTTTTCCCAGTCAATGCGGAGTTTTTAGAATCAAAAGGTGATGATTTTGGTTCACCGACAGACCCTTCAA
GTCTTTTGTACAATGGTGCTTATACACTAAGTGCTATTACATCTAAATCATCTGTCGAAATGACCAAAAACGAAAATTAC
TGGGATGCAGACAATGTTCACATCACAGATGTCAAATTGACCTATTTTGATGGTTCAGATCCTGATTCTCTCTTTAATAA
TTTTAAAGATGGTTCATACAGTTTTGCCCGTCTCTATCCAAACCAACCAAGCTTCAAGAAAGCTTCTAAAGAGTTTGGTG
ACAACATCTACTACAGTCAGCAAAATGCCTCAACTTTTATGTACTTCTTCAATGTTAACCGTACAGCTAATAAGATGACT
GAAAAATCACCAGAACAATTTGAAGATACTAAAGAAGCACTTCAAAACAAAGATTTCCGTCAAGCAGTGACATTTGCTTT
TGATCGTGCATCATGGAACTCGCAAGTGGCTGGTGAAGATGCAAAAGACAAAGCATTGCGTAATACGCTTGTTCCACCGA
CATTTGTTCAAGTTGATGGTAAAGACTTTGGTGATGAAGTTACAAAAGACCTAGAAACACTTGGTGATGAGTGGAAAGGT
ATCAACATCAAAGACGCTCAAAACGGACTCTATGATCCAGAAAAAGCTAAAGTTGAATTTGAAAAAGCCAAAGCGGAACT
AGGATCTAATGTATCATATCCAATTCAAATCGATACCGTGGTATCTCAAACAGATGAACTCACTGTTCAACGTGCGAAAT
CATTGAAACAATCTGTTGAATCTAACTTAGGTAAAGAAAATGTTCAAATCAACATTCTTGAAAAATCTGAAGAAGAATAC
CTAGCGGCCGCTTATAACGCTGAATCAGCAGAACAAATGGACTATGATATCATAATTTCAGGTTGGTCACCTGACTACCT
TGACCCATCTTCATATCTTGATATCTTCTCAACAGCAGAAGGTGCAGCATCAACCATGCGTCTAGGTATTGATACTAAGG
ACACAGCGTTAATCGAAAAAGTTGGCTTGGATAAATATCAAGAACAACTTGATAAAGCTTCTAGCATTACGGATGATGTT
AATGCTCGTTACACTGAGTACGCTAAAGCACAAGCTTGGTTAAGTGACAGTGCTCTTGTTATCCCAACCATCTCACTTGG
TGGTACGCCAGGTGTTACTCGTACCCAACCATTCTCATCACCATTCTCATGGGTAGGTAATAAAGGTGGAACTTATATTT
ACAAATATCAAAAAGTTCAAGACAAACCTGTTACAGCAAGTGAATATGAAAAAGCTTTAGAAAAATGGAAAACTAAACGT
GAACAGTCAAATGAAAAAGCTACAAAAGAATTAGCTGATCACGTTGCAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.216

100

0.513
  amiA3 Streptococcus thermophilus LMG 18311

50.989

100

0.51
  amiA3 Streptococcus thermophilus LMD-9

50.685

100

0.507

Multiple sequence alignment