Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CKV79_RS07340 Genome accession   NZ_LT906451
Coordinates   1628524..1629741 (+) Length   405 a.a.
NCBI ID   WP_028372967.1    Uniprot ID   -
Organism   Legionella lansingensis strain NCTC12830     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1623524..1634741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV79_RS07315 (SAMEA44548918_01484) - 1624574..1625134 (-) 561 WP_028372972.1 hypoxanthine-guanine phosphoribosyltransferase -
  CKV79_RS07320 (SAMEA44548918_01485) - 1625158..1625484 (-) 327 WP_028372971.1 DUF1820 family protein -
  CKV79_RS07325 (SAMEA44548918_01486) - 1625548..1626315 (-) 768 WP_051546124.1 methyltransferase domain-containing protein -
  CKV79_RS07330 (SAMEA44548918_01487) - 1626437..1626685 (-) 249 WP_028372969.1 hypothetical protein -
  CKV79_RS07335 (SAMEA44548918_01488) pilB 1626816..1628522 (+) 1707 WP_028372968.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CKV79_RS07340 (SAMEA44548918_01489) pilC 1628524..1629741 (+) 1218 WP_028372967.1 type II secretion system F family protein Machinery gene
  CKV79_RS07345 (SAMEA44548918_01490) - 1629738..1630601 (+) 864 WP_408606902.1 prepilin peptidase -
  CKV79_RS07350 (SAMEA44548918_01491) - 1630706..1631296 (-) 591 WP_131796106.1 triacylglycerol lipase -
  CKV79_RS07355 (SAMEA44548918_01492) - 1631469..1632056 (-) 588 WP_035915296.1 hypothetical protein -
  CKV79_RS07360 (SAMEA44548918_01493) - 1632069..1632524 (-) 456 WP_028372963.1 hypothetical protein -
  CKV79_RS07365 (SAMEA44548918_01494) - 1632754..1633569 (+) 816 WP_028372962.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 45765.30 Da        Isoelectric Point: 9.5392

>NTDB_id=1147401 CKV79_RS07340 WP_028372967.1 1628524..1629741(+) (pilC) [Legionella lansingensis strain NCTC12830]
MNNKSKMQHYHWQGLNQRGITCKGIIKASTLLEAKFEVIQQGIILKKISKKQFSLFQQRSKKINHWDISVFSRQIATLIQ
AGIPLITAFDIIKKGQAKYAMRDLIAKIQKEIASGLTLFESLNKHPIYFNPLYCSLIEAGEKSGTLALMINNIASYREKL
ERMKRKITKTLAYPLVILIIALLITFALLFFVIPEFAAMFNAYNAELPFITQQAIHLSNFCQDHYFIFCVMSVITTLTLI
YMPKYSSYFSQLLDRTLLNFPLIGAIISKSVFARFSRTLSITLAAGLPLVQALRLAANVTGNSVYQRASHKIIDEVICGQ
PMWVAIETTGLFPDMVVQMIAIGEESGVLEQMFHKIADYFEEDIDHSIDTLNTLLEPVIMSVLGLIIGFLLLAMYIPIFK
LGSIT

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1147401 CKV79_RS07340 WP_028372967.1 1628524..1629741(+) (pilC) [Legionella lansingensis strain NCTC12830]
ATGAATAACAAGTCTAAAATGCAACATTATCACTGGCAAGGCCTAAATCAACGAGGGATAACATGTAAAGGTATTATCAA
AGCCTCTACGCTATTAGAAGCAAAGTTTGAAGTCATACAACAAGGCATCATCCTTAAAAAAATATCTAAGAAACAATTCT
CTTTATTTCAGCAAAGATCCAAGAAAATAAATCACTGGGATATCTCTGTTTTCAGTAGGCAAATAGCTACCTTAATACAA
GCAGGAATTCCTTTAATCACGGCCTTCGATATCATTAAAAAGGGGCAAGCCAAATACGCGATGAGAGATTTGATTGCCAA
AATCCAAAAAGAAATTGCAAGCGGATTAACCCTTTTTGAATCATTAAATAAACACCCTATTTATTTTAATCCGCTGTACT
GTAGCCTAATTGAAGCTGGGGAAAAATCAGGCACTCTTGCGTTGATGATAAATAATATTGCTAGCTATAGGGAAAAACTC
GAACGGATGAAAAGAAAGATAACAAAAACCCTGGCTTACCCTCTAGTCATTTTAATCATTGCCCTGCTAATAACCTTTGC
CCTGTTATTTTTTGTCATCCCAGAATTTGCAGCGATGTTTAATGCCTATAATGCTGAGCTGCCATTCATAACTCAGCAAG
CCATTCATTTATCTAACTTTTGTCAAGATCACTATTTTATTTTTTGTGTAATGAGCGTAATAACAACATTAACTCTTATT
TATATGCCAAAATATTCTTCATACTTTTCCCAGCTCTTAGATAGAACATTATTAAATTTTCCCTTAATAGGGGCCATTAT
ATCTAAATCAGTCTTTGCTCGCTTTTCACGCACCTTATCTATTACGTTGGCAGCGGGATTGCCTTTAGTACAAGCTCTAC
GTCTTGCTGCTAACGTTACAGGTAATAGCGTCTATCAAAGAGCAAGTCACAAAATCATCGATGAAGTGATTTGTGGACAG
CCAATGTGGGTTGCGATAGAAACCACAGGTTTATTTCCAGATATGGTGGTGCAAATGATTGCTATCGGCGAAGAATCAGG
TGTCCTCGAACAGATGTTTCATAAAATAGCAGATTATTTTGAAGAGGACATTGATCACAGCATTGATACGTTAAATACTT
TGTTAGAGCCTGTTATCATGTCAGTATTAGGCCTTATTATTGGCTTTTTATTACTTGCCATGTATATCCCTATTTTTAAA
CTTGGTTCGATAACATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

49.005

99.259

0.486
  pilC Pseudomonas stutzeri DSM 10701

41.266

97.531

0.402
  pilC Acinetobacter baylyi ADP1

39.85

98.519

0.393
  pilC Acinetobacter baumannii D1279779

37.093

98.519

0.365

Multiple sequence alignment