Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   CKV83_RS06045 Genome accession   NZ_LT906439
Coordinates   1316459..1317418 (-) Length   319 a.a.
NCBI ID   WP_018374395.1    Uniprot ID   A0A239SV94
Organism   Streptococcus merionis strain NCTC13788     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1311459..1322418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS06030 (SAMEA4412692_01209) - 1313240..1313749 (-) 510 WP_018374392.1 GNAT family N-acetyltransferase -
  CKV83_RS06035 (SAMEA4412692_01210) - 1313751..1314266 (-) 516 WP_018374393.1 GNAT family N-acetyltransferase -
  CKV83_RS06040 (SAMEA4412692_01211) pepF 1314465..1316264 (-) 1800 WP_018374394.1 oligoendopeptidase F Regulator
  CKV83_RS06045 (SAMEA4412692_01212) coiA 1316459..1317418 (-) 960 WP_018374395.1 competence protein CoiA Machinery gene
  CKV83_RS06050 (SAMEA4412692_01213) - 1317522..1320062 (-) 2541 WP_018374396.1 M1 family metallopeptidase -
  CKV83_RS06055 (SAMEA4412692_01214) - 1320318..1321436 (-) 1119 WP_018374397.1 aminotransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37612.08 Da        Isoelectric Point: 8.7180

>NTDB_id=1147135 CKV83_RS06045 WP_018374395.1 1316459..1317418(-) (coiA) [Streptococcus merionis strain NCTC13788]
MLVAVNRFGRLVNTVSDKVTPDQAPFACPGCQSQVRFKKGKINRPHFAHATLAQCQFFTENESAEHLNLKGQLYRWARKS
QIDQISLEHCLPELGQIADLMLSGRIALEVQCSHLSVERLRERTKSYHSAGLEVLWLLGRKLWLKDSLTTLQRHFIYFSQ
NRGFHLWELDEQKAILRLKYLIHEDLHGKIQHLTEEFPFEEQNLLDCLRTPFKQQELAHFQGKMDAKIIDYIAQQLYYRN
PKWLAKQEKCYAQGDNLLTQSLADFYPQIQPVKGKHLTQVRQDLSAYYAHFQKYYENLEDKSRQTLYSPAFYERMTRDM

Nucleotide


Download         Length: 960 bp        

>NTDB_id=1147135 CKV83_RS06045 WP_018374395.1 1316459..1317418(-) (coiA) [Streptococcus merionis strain NCTC13788]
ATGTTAGTTGCAGTGAATCGCTTTGGGCGCTTGGTTAATACTGTTAGTGATAAAGTGACACCTGATCAGGCGCCGTTTGC
TTGCCCAGGTTGCCAAAGTCAGGTTCGTTTTAAAAAAGGCAAGATCAATCGTCCTCACTTTGCTCATGCTACTTTGGCGC
AATGCCAATTCTTCACAGAAAATGAATCAGCCGAGCATCTCAATCTCAAGGGACAACTTTATCGGTGGGCAAGAAAGTCA
CAGATAGATCAGATTAGCTTGGAGCATTGCCTGCCAGAGTTGGGGCAAATAGCTGATCTCATGCTTAGTGGCAGAATCGC
TTTGGAGGTACAATGCTCGCATTTGTCTGTAGAGCGACTGCGTGAGCGGACAAAGAGTTATCACAGCGCTGGCTTAGAAG
TTCTCTGGCTCTTGGGGCGTAAGCTCTGGCTCAAGGACAGCTTGACCACTCTCCAGCGTCACTTTATCTACTTTAGCCAG
AATCGTGGCTTTCATCTCTGGGAATTGGACGAGCAAAAAGCCATTTTACGTCTTAAATACCTGATTCACGAAGATCTGCA
TGGCAAGATTCAGCACCTGACGGAGGAATTTCCTTTTGAGGAGCAGAACTTGCTGGACTGTCTTAGAACACCATTTAAGC
AGCAAGAACTTGCTCATTTTCAGGGGAAGATGGACGCTAAGATTATAGACTACATTGCTCAACAGCTCTACTATCGTAAC
CCTAAATGGCTGGCCAAGCAGGAAAAATGTTATGCGCAAGGAGACAATCTACTGACCCAAAGTCTTGCTGACTTTTACCC
ACAAATTCAGCCAGTCAAGGGCAAGCATCTCACGCAAGTGCGACAAGATCTGAGCGCTTACTACGCCCATTTTCAAAAGT
ATTATGAAAATCTCGAGGATAAATCTCGCCAAACGCTTTATTCGCCAGCCTTTTATGAAAGAATGACTAGAGATATGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(24-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239SV94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

49.682

98.433

0.489
  coiA Streptococcus pneumoniae TIGR4

48.089

98.433

0.473
  coiA Streptococcus pneumoniae Rx1

48.089

98.433

0.473
  coiA Streptococcus pneumoniae D39

48.089

98.433

0.473
  coiA Streptococcus pneumoniae R6

48.089

98.433

0.473
  coiA Lactococcus lactis subsp. cremoris KW2

41.515

100

0.429

Multiple sequence alignment