Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CKV83_RS06040 Genome accession   NZ_LT906439
Coordinates   1314465..1316264 (-) Length   599 a.a.
NCBI ID   WP_018374394.1    Uniprot ID   -
Organism   Streptococcus merionis strain NCTC13788     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1309465..1321264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS06020 (SAMEA4412692_01207) - 1309683..1310390 (-) 708 WP_040834832.1 O-methyltransferase -
  CKV83_RS06025 (SAMEA4412692_01208) - 1310578..1312887 (-) 2310 WP_018374391.1 G5 domain-containing protein -
  CKV83_RS06030 (SAMEA4412692_01209) - 1313240..1313749 (-) 510 WP_018374392.1 GNAT family N-acetyltransferase -
  CKV83_RS06035 (SAMEA4412692_01210) - 1313751..1314266 (-) 516 WP_018374393.1 GNAT family N-acetyltransferase -
  CKV83_RS06040 (SAMEA4412692_01211) pepF 1314465..1316264 (-) 1800 WP_018374394.1 oligoendopeptidase F Regulator
  CKV83_RS06045 (SAMEA4412692_01212) coiA 1316459..1317418 (-) 960 WP_018374395.1 competence protein CoiA Machinery gene
  CKV83_RS06050 (SAMEA4412692_01213) - 1317522..1320062 (-) 2541 WP_018374396.1 M1 family metallopeptidase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68472.47 Da        Isoelectric Point: 4.5992

>NTDB_id=1147134 CKV83_RS06040 WP_018374394.1 1314465..1316264(-) (pepF) [Streptococcus merionis strain NCTC13788]
MVKNRNEIDEKYTWDLSTVFATDEAWEAELAEIMTALDEAKAFEGTLSESGQALLAVTDAQLALMRRIEKLYVYASMKND
QDTREAKYQEFQAKATSAYAKFSQVFAFFEPELLEISDETYAQFVKAAPGLEAYAHYFEKLFQNRPHVLSKSEEAILAAA
SEVLSAGSETFSILNNADLEFPNVKNEKGEEVQLSHGNYITIVESKDREVRKGAYEAMYATYKQFQHVFAKTLQTTVKTH
NLNATLRHYASAREAALARNFVPEAVYDTLVSAVNKHLPLLHRYIKLRKEVLGLDDLKMYDMYTSLAETDVAYTYEEALV
KSEEALAILGEDYLNRVKTAFKNRWIDVHENAGKRSGAYSGGSYDTNAFMLLNWQDTLNNLYTLVHETGHSMHSSYTREN
QPYVYGDYSIFLAEIASTTNENILTEHLLNEVEDDATRFAILNNYLDGFRGTIFRQTQFAEFEQAIHLADQKGEVLTSEY
LNSLYADLNEKYYGLAKEDNPQIQYEWARIPHFYYDFYVFQYSTGFAAATALAEKIVNGTQEDKDKYISYLSAGSSDYPI
NVMQKAGVDMTKEDYLNDAFKVFERRLDELEALVSKLKE

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=1147134 CKV83_RS06040 WP_018374394.1 1314465..1316264(-) (pepF) [Streptococcus merionis strain NCTC13788]
ATGGTAAAAAATAGAAACGAAATCGATGAAAAATACACTTGGGATCTGTCTACCGTTTTTGCGACAGATGAGGCTTGGGA
AGCAGAATTAGCTGAGATTATGACAGCTCTTGATGAAGCGAAGGCTTTTGAAGGGACGCTTTCTGAATCTGGACAAGCCC
TTTTAGCGGTGACAGACGCTCAGCTCGCCCTCATGCGTCGGATTGAAAAGCTTTATGTCTATGCTAGCATGAAGAATGAC
CAAGACACTCGCGAGGCTAAATACCAAGAATTTCAGGCTAAAGCGACTAGTGCTTATGCTAAATTCAGTCAAGTCTTTGC
TTTCTTTGAGCCAGAGTTGCTGGAAATCTCTGATGAGACTTACGCTCAGTTTGTCAAGGCTGCACCAGGTCTTGAAGCCT
ATGCCCATTATTTTGAAAAATTGTTCCAAAACCGTCCGCATGTACTGTCAAAATCAGAAGAAGCTATTCTAGCCGCTGCC
AGTGAAGTCTTGTCTGCAGGCTCTGAAACCTTCTCGATCCTCAACAACGCAGACCTAGAATTTCCAAATGTTAAAAATGA
AAAGGGCGAAGAGGTTCAGCTCTCACACGGGAACTACATCACCATTGTTGAGTCTAAGGATCGTGAGGTTCGTAAAGGTG
CCTATGAGGCTATGTATGCAACCTACAAGCAATTCCAGCATGTCTTTGCCAAGACCTTGCAGACGACTGTCAAAACCCAT
AACCTCAACGCGACCCTGCGTCATTATGCTAGTGCGCGCGAAGCTGCCTTGGCTCGTAACTTTGTGCCAGAAGCAGTCTA
TGACACGCTCGTGTCTGCGGTTAATAAGCATCTGCCGCTGCTTCACCGTTACATCAAGCTCCGCAAGGAAGTTTTGGGCT
TAGATGATCTTAAGATGTACGATATGTATACCTCGCTGGCTGAGACCGATGTCGCCTATACCTATGAAGAAGCCCTCGTT
AAATCAGAAGAAGCCTTGGCCATCTTGGGTGAGGATTACCTCAACCGTGTCAAGACAGCCTTTAAGAATCGCTGGATTGA
TGTTCATGAAAATGCTGGTAAGCGTTCGGGTGCCTACTCAGGCGGTTCATACGACACCAATGCCTTCATGTTGCTCAACT
GGCAGGATACTCTCAATAACCTTTACACATTGGTTCATGAGACTGGTCACTCCATGCACTCTAGCTATACTCGTGAAAAT
CAACCTTACGTCTATGGCGATTACTCGATTTTCCTAGCTGAGATTGCCTCAACGACCAATGAAAATATCTTGACCGAACA
CTTGCTCAACGAAGTTGAAGATGACGCGACCCGCTTTGCGATTTTGAACAACTATCTGGATGGTTTCCGTGGAACTATTT
TCCGTCAGACCCAGTTTGCAGAGTTTGAACAGGCCATTCATCTGGCTGATCAGAAAGGCGAAGTCCTAACCAGCGAGTAC
CTCAATTCGCTTTACGCAGACCTCAATGAGAAATACTATGGACTTGCCAAGGAAGACAATCCGCAAATTCAGTACGAATG
GGCTCGGATTCCGCATTTCTATTATGATTTCTACGTTTTCCAATATTCCACAGGATTTGCAGCAGCGACAGCTCTCGCAG
AGAAAATCGTGAATGGAACTCAGGAAGACAAGGACAAGTACATCAGCTATCTCAGCGCAGGTAGCTCAGATTATCCGATC
AATGTCATGCAAAAAGCAGGTGTTGACATGACCAAAGAAGACTACCTCAACGATGCTTTCAAAGTTTTTGAACGCCGTCT
GGATGAGTTAGAAGCCTTGGTGTCTAAGTTGAAAGAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(203-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.597

99.499

0.643

Multiple sequence alignment