Detailed information NTG1147104

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: CKW02_RS17380
• Genome accession: NZ_LT906438
• Coordinates: 3313565..3314071 (-)
• Length: 168 a.a.
• NCBI ID: WP_050782676.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain NCTC10337
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3308565..3319071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKW02_RS17345 (SAMEA4076707_03540)	fliW	3308698..3309132 (-)	435	WP_003212676.1	flagellar assembly protein FliW	-
CKW02_RS17350 (SAMEA4076707_03541)	-	3309161..3309739 (-)	579	WP_003213106.1	DUF6470 family protein	-
CKW02_RS17355 (SAMEA4076707_03542)	flgL	3309788..3310699 (-)	912	WP_003213719.1	flagellar hook-associated protein FlgL	-
CKW02_RS17360 (SAMEA4076707_03543)	flgK	3310709..3312229 (-)	1521	WP_003213544.1	flagellar hook-associated protein FlgK	-
CKW02_RS17365 (SAMEA4076707_03544)	-	3312245..3312727 (-)	483	WP_003213076.1	flagellar protein FlgN	-
CKW02_RS17370 (SAMEA4076707_03545)	flgM	3312746..3313009 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
CKW02_RS17375 (SAMEA4076707_03546)	-	3313089..3313508 (-)	420	WP_003212865.1	TIGR03826 family flagellar region protein	-
CKW02_RS17380 (SAMEA4076707_03547)	comFC	3313565..3314071 (-)	507	WP_050782676.1	ComF family protein	Machinery gene
CKW02_RS20770	-	3314084..3314251 (-)	168	Protein_3362	ComF family protein	-
CKW02_RS17385 (SAMEA4076707_03548)	-	3314248..3314541 (-)	294	WP_003213271.1	late competence development ComFB family protein	-
CKW02_RS17390 (SAMEA4076707_03549)	comFA	3314608..3315987 (-)	1380	WP_269457875.1	DEAD/DEAH box helicase	Machinery gene
CKW02_RS17395 (SAMEA4076707_03551)	-	3316107..3316949 (-)	843	WP_003213402.1	DegV family protein	-
CKW02_RS17400 (SAMEA4076707_03552)	degU	3317167..3317856 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator

Sequence

Protein

• Length: 168 a.a.
• Molecular weight: 19220.45 Da
• Isoelectric Point: 10.5872

>NTDB_id=1147104 CKW02_RS17380 WP_050782676.1 3313565..3314071(-) (comFC) [Bacillus pumilus strain NCTC10337]
MWKERPDSTTVLVKNRSVYAYNDLMKDVLSRFKFRGDTALAELFKQDVRAVFKRSFSMKEPVLIPIPLSKERLKERGFNQ
SVILASLIGEPILQPLVKIHQSKQSKKKKNERLDQKGMFQITQTDAIVQREVILIDDIYTTGATIYDAARILKEAGAKSV
SSFTLIRS

Nucleotide

• Length: 507 bp

>NTDB_id=1147104 CKW02_RS17380 WP_050782676.1 3313565..3314071(-) (comFC) [Bacillus pumilus strain NCTC10337]
ATGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTCTATGCTTACAACGATTTGATGAAAGA
TGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGATGTCCGAGCAGTATTTAAGC
GCTCTTTTTCAATGAAAGAACCTGTCCTGATCCCGATTCCTTTAAGTAAAGAAAGACTAAAGGAAAGAGGGTTTAATCAG
TCCGTCATACTTGCTTCCTTGATTGGTGAGCCGATCCTTCAGCCACTTGTAAAAATACATCAAAGCAAACAGTCCAAGAA
AAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCACGCAGACAGATGCGATCGTTCAAAGGGAAGTTATCT
TAATTGACGACATTTATACAACAGGGGCCACCATTTATGATGCGGCGAGAATTTTAAAAGAAGCAGGTGCCAAAAGTGTT
TCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (76-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	52.071	100	0.524
comFC/cflB	Streptococcus mitis NCTC 12261	40.764	93.452	0.381
comFC/cflB	Streptococcus pneumoniae TIGR4	40.127	93.452	0.375
comFC/cflB	Streptococcus pneumoniae Rx1	40.127	93.452	0.375
comFC/cflB	Streptococcus pneumoniae D39	40.127	93.452	0.375
comFC/cflB	Streptococcus pneumoniae R6	40.127	93.452	0.375
comFC/cflB	Streptococcus mitis SK321	40.127	93.452	0.375