Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CKW02_RS17400 Genome accession   NZ_LT906438
Coordinates   3317167..3317856 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain NCTC10337     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3312167..3322856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW02_RS17365 (SAMEA4076707_03544) - 3312245..3312727 (-) 483 WP_003213076.1 flagellar protein FlgN -
  CKW02_RS17370 (SAMEA4076707_03545) flgM 3312746..3313009 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  CKW02_RS17375 (SAMEA4076707_03546) - 3313089..3313508 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  CKW02_RS17380 (SAMEA4076707_03547) comFC 3313565..3314071 (-) 507 WP_050782676.1 ComF family protein Machinery gene
  CKW02_RS20770 - 3314084..3314251 (-) 168 Protein_3362 ComF family protein -
  CKW02_RS17385 (SAMEA4076707_03548) - 3314248..3314541 (-) 294 WP_003213271.1 late competence development ComFB family protein -
  CKW02_RS17390 (SAMEA4076707_03549) comFA 3314608..3315987 (-) 1380 WP_269457875.1 DEAD/DEAH box helicase Machinery gene
  CKW02_RS17395 (SAMEA4076707_03551) - 3316107..3316949 (-) 843 WP_003213402.1 DegV family protein -
  CKW02_RS17400 (SAMEA4076707_03552) degU 3317167..3317856 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  CKW02_RS17405 (SAMEA4076707_03553) degS 3317921..3319096 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  CKW02_RS17410 (SAMEA4076707_03554) - 3319318..3319986 (+) 669 WP_003212936.1 YigZ family protein -
  CKW02_RS17415 (SAMEA4076707_03555) - 3319971..3321047 (+) 1077 WP_003213564.1 LCP family protein -
  CKW02_RS17420 (SAMEA4076707_03556) - 3321083..3322150 (-) 1068 WP_003212692.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1147106 CKW02_RS17400 WP_008348273.1 3317167..3317856(-) (degU) [Bacillus pumilus strain NCTC10337]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1147106 CKW02_RS17400 WP_008348273.1 3317167..3317856(-) (degU) [Bacillus pumilus strain NCTC10337]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGATGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment