Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   CKW02_RS17405 Genome accession   NZ_LT906438
Coordinates   3317921..3319096 (-) Length   391 a.a.
NCBI ID   WP_003213166.1    Uniprot ID   -
Organism   Bacillus pumilus strain NCTC10337     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3312921..3324096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW02_RS17375 (SAMEA4076707_03546) - 3313089..3313508 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  CKW02_RS17380 (SAMEA4076707_03547) comFC 3313565..3314071 (-) 507 WP_050782676.1 ComF family protein Machinery gene
  CKW02_RS20770 - 3314084..3314251 (-) 168 Protein_3362 ComF family protein -
  CKW02_RS17385 (SAMEA4076707_03548) - 3314248..3314541 (-) 294 WP_003213271.1 late competence development ComFB family protein -
  CKW02_RS17390 (SAMEA4076707_03549) comFA 3314608..3315987 (-) 1380 WP_269457875.1 DEAD/DEAH box helicase Machinery gene
  CKW02_RS17395 (SAMEA4076707_03551) - 3316107..3316949 (-) 843 WP_003213402.1 DegV family protein -
  CKW02_RS17400 (SAMEA4076707_03552) degU 3317167..3317856 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  CKW02_RS17405 (SAMEA4076707_03553) degS 3317921..3319096 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  CKW02_RS17410 (SAMEA4076707_03554) - 3319318..3319986 (+) 669 WP_003212936.1 YigZ family protein -
  CKW02_RS17415 (SAMEA4076707_03555) - 3319971..3321047 (+) 1077 WP_003213564.1 LCP family protein -
  CKW02_RS17420 (SAMEA4076707_03556) - 3321083..3322150 (-) 1068 WP_003212692.1 glycosyltransferase family 4 protein -
  CKW02_RS17425 (SAMEA4076707_03557) tuaH 3322282..3323472 (-) 1191 WP_003213164.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45523.25 Da        Isoelectric Point: 5.8757

>NTDB_id=1147107 CKW02_RS17405 WP_003213166.1 3317921..3319096(-) (degS) [Bacillus pumilus strain NCTC10337]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=1147107 CKW02_RS17405 WP_003213166.1 3317921..3319096(-) (degS) [Bacillus pumilus strain NCTC10337]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTTGTAGAAGAGCTGAAGCAAATCAAGCAACAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTCACTATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTACAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGTCAAGTTGGCGTGTTACTT
GAAGATGCTCAAGCAAAACAAGATTTTGGACTTAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTATCCCGTGA
AATTCACGACGGTCCGGCCCAAATGCTGGCAAACGTAATGATGCGTTCCGAATTAATTGAACGTATTTTCAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATCACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCTCAAGAAGCTGTCACAAATTCACTGAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTC
ACGAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTTGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

85.455

98.465

0.841

Multiple sequence alignment