Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B5474_RS01135 Genome accession   NZ_LT605059
Coordinates   240826..242313 (-) Length   495 a.a.
NCBI ID   WP_079547997.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain NCTC7364     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 235826..247313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5474_RS20160 (NCTC7364_00223) - 236513..236683 (+) 171 WP_000097144.1 hypothetical protein -
  B5474_RS01115 (NCTC7364_00224) - 236740..237552 (+) 813 WP_000975212.1 TorF family putative porin -
  B5474_RS01120 (NCTC7364_00225) - 237595..238473 (-) 879 WP_079547994.1 dihydrodipicolinate synthase family protein -
  B5474_RS01125 (NCTC7364_00226) - 238489..239265 (-) 777 WP_079547995.1 aldolase -
  B5474_RS01130 (NCTC7364_00227) - 239377..240811 (+) 1435 Protein_216 PLP-dependent aminotransferase family protein -
  B5474_RS01135 (NCTC7364_00228) comM 240826..242313 (-) 1488 WP_079547997.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B5474_RS01140 (NCTC7364_00229) - 242379..242606 (-) 228 WP_000894500.1 accessory factor UbiK family protein -
  B5474_RS01145 (NCTC7364_00230) glnK 242886..243224 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  B5474_RS01150 (NCTC7364_00231) - 243282..244679 (+) 1398 WP_000738519.1 ammonium transporter -
  B5474_RS01155 (NCTC7364_00232) nrdR 244838..245296 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  B5474_RS01160 (NCTC7364_00233) ribD 245312..246397 (+) 1086 WP_001292506.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54524.49 Da        Isoelectric Point: 7.4187

>NTDB_id=1145127 B5474_RS01135 WP_079547997.1 240826..242313(-) (comM) [Acinetobacter baumannii strain NCTC7364]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSIEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
RETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1145127 B5474_RS01135 WP_079547997.1 240826..242313(-) (comM) [Acinetobacter baumannii strain NCTC7364]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGATTACCCTCTCTAACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCCGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAATTGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGGCACTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTACCTTCCATTTTACCGCCACTTTCTACT
CGAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGTATATCGGGAC
CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACAACTGTACGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCCAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.471

Multiple sequence alignment