Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A8Q77_RS07260 Genome accession   NZ_LT571436
Coordinates   1575649..1575954 (-) Length   101 a.a.
NCBI ID   WP_064130790.1    Uniprot ID   A0A181CIZ3
Organism   Neisseria weaveri strain NCTC13585     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570649..1580954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8Q77_RS07240 (SAMEA3174300_01452) coaE 1570990..1571613 (-) 624 WP_064130789.1 dephospho-CoA kinase -
  A8Q77_RS07245 (SAMEA3174300_01453) pilD 1571615..1572475 (-) 861 WP_004285616.1 prepilin peptidase Machinery gene
  A8Q77_RS07250 (SAMEA3174300_01454) pilG 1572478..1573719 (-) 1242 WP_004282575.1 type II secretion system F family protein Machinery gene
  A8Q77_RS07255 (SAMEA3174300_01455) pilF 1573743..1575422 (-) 1680 WP_004282574.1 type IV-A pilus assembly ATPase PilB Machinery gene
  A8Q77_RS07260 (SAMEA3174300_01456) comE 1575649..1575954 (-) 306 WP_064130790.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 10473.38 Da        Isoelectric Point: 10.5494

>NTDB_id=1143807 A8Q77_RS07260 WP_064130790.1 1575649..1575954(-) (comE) [Neisseria weaveri strain NCTC13585]
MKRYLLGLAGVLLSALSLAAVNINTATAEELKALPGIGPAKAEAIVAYRSANGPFKAVEDLKKVKGIGEGVYGRLKDEAT
VAGVKKKEAKPLAKKDGSKKP

Nucleotide


Download         Length: 306 bp        

>NTDB_id=1143807 A8Q77_RS07260 WP_064130790.1 1575649..1575954(-) (comE) [Neisseria weaveri strain NCTC13585]
ATGAAACGATATCTGTTGGGTTTGGCCGGAGTGCTGCTGTCGGCGCTGTCCTTGGCGGCGGTGAACATCAACACCGCAAC
GGCGGAGGAATTGAAGGCGCTGCCGGGTATCGGTCCGGCGAAGGCGGAGGCGATTGTGGCCTACCGCAGTGCGAACGGTC
CGTTCAAAGCGGTGGAGGACTTGAAGAAGGTGAAGGGGATAGGCGAAGGCGTGTACGGCCGTCTGAAGGATGAGGCGACG
GTGGCGGGGGTGAAGAAGAAGGAGGCGAAGCCGCTGGCGAAGAAAGACGGAAGCAAAAAACCTTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A181CIZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comEA Vibrio parahaemolyticus RIMD 2210633

44.944

88.119

0.396
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

80.198

0.386

Multiple sequence alignment