Detailed information NTG1143679

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: BJR96_RS01160
• Genome accession: NZ_LT545678
• Coordinates: 201482..201895 (+)
• Length: 137 a.a.
• NCBI ID: WP_000244259.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae isolate SA111
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 196482..206895

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJR96_RS01135 (SA111_00213)	-	197172..197537 (+)	366	WP_000285374.1	DUF1033 family protein	-
BJR96_RS01140 (SA111_00214)	-	197767..199227 (+)	1461	WP_000468685.1	IS1182-like element IS1563 family transposase	-
BJR96_RS01145 (SA111_00215)	comYA	199273..200244 (+)	972	WP_000250798.1	competence type IV pilus ATPase ComGA	Machinery gene
BJR96_RS01150 (SA111_00216)	comYB	200138..201181 (+)	1044	WP_261368811.1	competence type IV pilus assembly protein ComGB	Machinery gene
BJR96_RS01155 (SA111_00217)	comGC/cglC	201178..201507 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
BJR96_RS01160 (SA111_00218)	comYD	201482..201895 (+)	414	WP_000244259.1	competence type IV pilus minor pilin ComGD	Machinery gene
BJR96_RS01165 (SA111_00219)	comGE	201867..202166 (+)	300	WP_001872488.1	competence type IV pilus minor pilin ComGE	-
BJR96_RS01170 (SA111_00220)	comGF	202120..202581 (+)	462	WP_001874060.1	competence type IV pilus minor pilin ComGF	-
BJR96_RS01175 (SA111_00221)	comGG	202559..202930 (+)	372	WP_000601101.1	competence type IV pilus minor pilin ComGG	-
BJR96_RS01180 (SA111_00222)	comYH	203045..204019 (+)	975	WP_001008569.1	class I SAM-dependent methyltransferase	Machinery gene
BJR96_RS01185 (SA111_00223)	-	204051..205244 (+)	1194	WP_000047534.1	acetate kinase	-
BJR96_RS01190	-	205372..205564 (+)	193	Protein_180	helix-turn-helix transcriptional regulator	-
BJR96_RS01195	-	205543..205830 (+)	288	Protein_181	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15938.41 Da
• Isoelectric Point: 9.9787

>NTDB_id=1143679 BJR96_RS01160 WP_000244259.1 201482..201895(+) (comYD) [Streptococcus agalactiae isolate SA111]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=1143679 BJR96_RS01160 WP_000244259.1 201482..201895(+) (comYD) [Streptococcus agalactiae isolate SA111]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGACACACTTGCATTTGACGCTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394