Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AC2117_RS17650 Genome accession   NZ_LS999521
Coordinates   3686234..3687718 (+) Length   494 a.a.
NCBI ID   WP_133975794.1    Uniprot ID   A0A446ZPE4
Organism   Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3681234..3692718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC2117_RS17625 (AC2117_03495) ribD 3682189..3683274 (-) 1086 WP_133975788.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AC2117_RS17630 (AC2117_03496) nrdR 3683290..3683748 (-) 459 WP_003654416.1 transcriptional regulator NrdR -
  AC2117_RS17635 (AC2117_03497) - 3683873..3685267 (-) 1395 WP_133975790.1 ammonium transporter -
  AC2117_RS17640 (AC2117_03498) glnK 3685324..3685662 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  AC2117_RS17645 (AC2117_03499) - 3685941..3686168 (+) 228 WP_133975792.1 accessory factor UbiK family protein -
  AC2117_RS17650 (AC2117_03500) comM 3686234..3687718 (+) 1485 WP_133975794.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AC2117_RS17655 (AC2117_03501) - 3687823..3688368 (+) 546 WP_133975796.1 NADPH-dependent FMN reductase -
  AC2117_RS17660 - 3688383..3688472 (+) 90 Protein_3428 ATP-binding protein -
  AC2117_RS17665 (AC2117_03503) - 3688498..3689959 (-) 1462 Protein_3429 PLP-dependent aminotransferase family protein -
  AC2117_RS17670 (AC2117_03504) - 3690071..3690847 (+) 777 WP_133975798.1 aldolase -
  AC2117_RS17675 (AC2117_03505) - 3690863..3691741 (+) 879 WP_133975800.1 dihydrodipicolinate synthase family protein -
  AC2117_RS17680 (AC2117_03506) - 3691784..3692596 (-) 813 WP_197730948.1 TorF family putative porin -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54415.31 Da        Isoelectric Point: 7.9075

>NTDB_id=1143512 AC2117_RS17650 WP_133975794.1 3686234..3687718(+) (comM) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCAEDFEFIGELALDGHVRPVSGTLTLAMACQQAKHKMLFPFDNSQDISHLPDFKCYPVSHL
KEVCEHFLGTKSLSSIEPSTTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTSHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPVE
NSSSVRQRVIYAYEQQIQRQNCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SSHLTEALSYRGNS

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=1143512 AC2117_RS17650 WP_133975794.1 3686234..3687718(+) (comM) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTGGGTTTACATGCACCTCTCATTGAAGTAGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACCATTGTAGGCCTAGCCGAAGCGGCAGTAAGAGAAAGTAAAGATCGAGTTCGCTCAGCAATTA
TTAACAGTGGATTTCAATTTCCGACTAAACGACTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGTTCACGT
CTAGATTTACCAATTGCTTTAGGTATTTTAATTGCCTCTGGTCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTTAT
TGGAGAGTTAGCACTTGATGGTCATGTAAGGCCAGTGTCAGGTACTTTAACTTTGGCAATGGCGTGTCAACAAGCCAAGC
ATAAAATGCTTTTTCCGTTTGATAATAGTCAGGATATTAGTCATTTACCTGACTTTAAATGTTATCCAGTGAGCCATTTA
AAAGAAGTCTGTGAACATTTTCTGGGCACAAAATCTCTATCTTCGATTGAACCTTCAACTACATCAAATCAAATGCCTTA
TAAATTTGACCTTGCAGATGTAAAAGGTCAGCTACGCCCACGCCGCGCACTCGAAATTGCTGCTGCTGGGGGGCACTCCT
TACTTTTTAAAGGACCACCCGGCACCGGTAAAACTTTACTCGCCTCAAGGCTCCCTTCAATTTTGCCGCCTCTTTCTAAT
CAAGAAACACTTGAAGTTGCAAGCATTTACTCTATTTCAAATACATCTCATACGTTTGGTCAACGGCCATTTCGAGCGCC
CCATCATACAGCATCCGCTATTGCACTCGTTGGGGGCGGTTCTCATCCTAAACCGGGTGAAATTACATTATCGCATTTAG
GCGTGCTCTTTTTAGATGAACTTCCTGAGTTTGATAGAAAAGTACTAGAAGTTTTACGTCAGCCGCTTGAGTCCAAAGAA
ATCATTATTTCACGAGCAGCTCGGCAAATTACTTACCCAGCTAACTTCCAACTGATTGCAGCGATGAACCCCTGCCCATG
TGGTTATGCATTTAACCAAGATAGTCGTTGTCAGTGTTCACCTGAGAGTATTAAGCGCTATCAAAACCGTATATCGGGAC
CTTTACTTGACCGTATCGATTTACATATTGATGTGCCACCATTAAAGGCCCAAGAGCTACAAGATCCAACGCCTGTTGAA
AATTCGAGCAGTGTTCGACAACGTGTGATTTATGCCTATGAACAACAGATTCAAAGACAAAATTGTTTAAATCAAGCGCT
TTCGCCGAAACAGCTAGAACAACATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCGGCTCGTGCTTATCATCGTGTTTTACGCGTTGCTCGTACCATTGCCGATTTAGCTCAAAGTGAAGTGATTCAA
AGTTCTCACCTTACAGAAGCATTATCCTATCGAGGAAATAGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A446ZPE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.101

100

0.502
  comM Glaesserella parasuis strain SC1401

49.4

100

0.5
  comM Legionella pneumophila str. Paris

49.598

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.598

100

0.5
  comM Haemophilus influenzae Rd KW20

48.898

100

0.494
  comM Vibrio campbellii strain DS40M4

47.879

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.527

100

0.464

Multiple sequence alignment