Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DYY97_RS11320 Genome accession   NZ_LS991421
Coordinates   2322320..2324512 (-) Length   730 a.a.
NCBI ID   WP_070650604.1    Uniprot ID   -
Organism   Lacticaseibacillus zeae isolate CECT 9104     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2317320..2329512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY97_RS15385 - 2317727..2317894 (+) 168 WP_155807535.1 hypothetical protein -
  DYY97_RS11305 - 2318196..2319173 (+) 978 WP_047105493.1 aldo/keto reductase -
  DYY97_RS11310 - 2319460..2320815 (-) 1356 WP_070650602.1 threonine/serine ThrE exporter family protein -
  DYY97_RS11315 - 2320929..2322308 (-) 1380 WP_070650603.1 bacteriocin secretion accessory protein -
  DYY97_RS11320 comA 2322320..2324512 (-) 2193 WP_070650604.1 peptide cleavage/export ABC transporter Regulator
  DYY97_RS15390 - 2324829..2324975 (-) 147 WP_168165295.1 bacteriocin-like peptide, LSEI_2386 family -
  DYY97_RS11325 - 2325142..2326443 (+) 1302 WP_070650605.1 GHKL domain-containing protein -
  DYY97_RS11330 - 2326445..2327251 (+) 807 WP_070650606.1 LytR/AlgR family response regulator transcription factor -
  DYY97_RS11345 - 2328191..2328349 (-) 159 WP_070650607.1 bacteriocin leader domain-containing protein -
  DYY97_RS11350 - 2328377..2328574 (-) 198 WP_093997888.1 ComC/BlpC family leader-containing pheromone/bacteriocin -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 81775.40 Da        Isoelectric Point: 7.8977

>NTDB_id=1143088 DYY97_RS11320 WP_070650604.1 2322320..2324512(-) (comA) [Lacticaseibacillus zeae isolate CECT 9104]
MFKYKFKLGQATYYKRYYTPQVDERDCGVAALNMLLKFHKSDYSLAHLRQLAKTDQEGTTALGIVRAAQELHFETKAVKA
DMTLFDLDDAPYPILVHVLKRGELLHYYVVFKATKDHILIGDPDPSVAMTWLSKEEFAKEWSGVAIFIAPEPQYQPRKED
KGSLFAFVPLLARQKVIIANIIVAALLITVISIVGSYFLQSIIDTYIPSAMRTTLGMIASGLILAYILQSVLTYGQNFLM
AVLGQRLSIDVILGYVRHLYELPMSFFATRRTGEIVSRFSDANKIIDALANTIMTLFLDVWIVLILGIVLGIQNTTLFLV
SLIAVPCYLVIVFAFQRPFNRLNQETMESNAILSSSIIEDLNGIETIKLLTGEKVSYERVDREFVTYLKKSFNYTKADQL
QQATKGLLKLILNVVVLWIGASLVMANKMSLGQMLTFNALLSYFTNPLESIINLQPKLQMAKVANNRLNEVYLVESEFKE
QRHLTDRRLIDGAINVHDVSFKYGFGQDILKHVHLEVPANAKYTIVGMSGSGKSTLAKLLVGFYPVEIGKGKITFNGAQI
SDVALTTLRQYIEYVPQEPFIFSGSVMENLTLGSRADLTQAQLEDACAVAEIATDIMNLPQMWQTKLTESGSILSGGQKQ
RLAIARALLSPAKVLIFDESTSSLDTITERRIVDRLLAMKDRTIIFVAHRLTIAAKTEQIVVMDHGEIVEQGNHAELLAK
QGYYARLVSE

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=1143088 DYY97_RS11320 WP_070650604.1 2322320..2324512(-) (comA) [Lacticaseibacillus zeae isolate CECT 9104]
ATGTTCAAATACAAATTCAAACTAGGTCAAGCAACATACTACAAACGCTATTACACGCCTCAGGTAGATGAGCGTGATTG
CGGCGTTGCGGCGCTTAATATGTTACTGAAGTTTCATAAGTCCGACTATTCCCTTGCGCATTTACGGCAATTAGCCAAGA
CGGATCAGGAAGGGACAACAGCGTTAGGCATTGTCCGCGCTGCCCAGGAACTTCACTTCGAAACCAAGGCAGTTAAGGCG
GATATGACGTTGTTTGATTTGGATGATGCGCCATATCCGATCTTGGTACATGTTTTGAAGCGCGGTGAGTTGCTGCATTA
TTATGTCGTATTTAAGGCAACGAAGGATCATATCTTAATTGGTGATCCTGACCCTTCAGTCGCAATGACCTGGCTTTCAA
AAGAGGAGTTTGCCAAGGAGTGGTCGGGGGTGGCTATCTTTATTGCTCCTGAACCGCAATATCAACCGCGCAAAGAGGAC
AAAGGCAGCTTGTTTGCCTTCGTGCCGTTGCTGGCGCGGCAAAAAGTGATCATTGCCAATATTATTGTTGCGGCTTTGTT
GATCACCGTGATTAGCATTGTTGGGTCGTATTTTCTGCAATCGATCATTGATACCTATATTCCCAGTGCCATGCGGACAA
CGTTAGGGATGATCGCCAGTGGGCTGATTCTCGCTTACATCCTTCAATCTGTTTTGACGTATGGCCAGAATTTCTTGATG
GCGGTTTTAGGGCAGCGGTTGTCGATTGACGTTATTTTGGGTTACGTTCGGCATCTGTATGAATTGCCTATGTCTTTTTT
TGCAACACGCCGAACCGGGGAGATCGTGTCGCGGTTTTCGGACGCCAATAAAATTATCGATGCCTTGGCGAATACGATCA
TGACCCTGTTTCTTGATGTTTGGATCGTGCTTATTTTAGGCATTGTGTTGGGCATTCAAAATACTACATTGTTCCTGGTA
TCCTTAATTGCGGTGCCTTGTTACTTGGTGATTGTTTTCGCGTTTCAACGTCCTTTCAATCGGCTGAATCAAGAGACGAT
GGAAAGCAATGCCATTTTGAGTTCATCGATTATTGAGGATCTGAACGGTATTGAGACCATTAAGTTGCTGACAGGTGAAA
AGGTCAGTTATGAGCGGGTTGACCGTGAATTTGTCACGTATTTAAAAAAGTCATTCAATTACACGAAAGCCGACCAGCTT
CAACAAGCCACCAAGGGGTTGCTGAAGCTTATCTTGAATGTGGTGGTGTTGTGGATTGGGGCGAGTCTGGTGATGGCTAA
CAAGATGAGCTTGGGGCAGATGCTGACGTTCAATGCCTTGCTGTCATACTTCACCAATCCGTTAGAAAGTATCATTAACT
TGCAACCAAAATTACAAATGGCCAAGGTGGCGAATAATCGGCTGAATGAGGTTTATTTGGTTGAATCTGAGTTTAAAGAA
CAGCGCCATCTGACCGATCGCCGCCTGATCGATGGTGCCATCAACGTGCATGACGTTTCCTTTAAATATGGGTTTGGGCA
GGATATTTTAAAGCATGTCCATCTTGAGGTGCCCGCAAATGCTAAATACACGATTGTCGGCATGAGTGGCTCGGGTAAAT
CAACTTTGGCTAAATTATTGGTCGGCTTTTACCCGGTTGAAATAGGCAAGGGAAAAATTACCTTTAATGGCGCGCAGATC
AGTGATGTGGCGCTCACGACGCTGCGGCAATATATCGAGTATGTGCCGCAAGAGCCGTTTATTTTTTCCGGATCGGTGAT
GGAAAACTTAACGTTAGGCAGTCGTGCCGATTTGACGCAGGCGCAACTTGAAGACGCATGTGCCGTTGCGGAGATTGCCA
CGGATATTATGAATCTGCCGCAAATGTGGCAGACCAAGCTCACGGAAAGCGGGAGCATTTTATCAGGCGGGCAGAAGCAG
CGCTTGGCGATTGCTCGGGCGTTGTTGTCGCCAGCCAAAGTGCTGATTTTTGATGAGTCGACTAGCAGTTTGGATACCAT
CACGGAGCGGCGGATTGTGGATCGGTTGTTGGCAATGAAGGATCGAACGATTATTTTTGTCGCTCACCGGCTCACCATCG
CGGCTAAAACCGAACAGATTGTGGTGATGGATCATGGAGAAATTGTTGAGCAGGGCAATCATGCCGAACTGCTGGCGAAG
CAGGGATATTATGCGCGGTTGGTGAGTGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(510-662)

ABC transporter transmembrane region (ABC_membrane)

(180-448)

Peptidase C39 family (Peptidase_C39)

(16-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

58.042

97.945

0.568
  comA Streptococcus pneumoniae Rx1

58.042

97.945

0.568
  comA Streptococcus pneumoniae D39

58.042

97.945

0.568
  comA Streptococcus pneumoniae R6

58.042

97.945

0.568
  comA Streptococcus mitis SK321

57.622

97.945

0.564
  comA Streptococcus pneumoniae TIGR4

57.622

97.945

0.564
  comA Streptococcus gordonii str. Challis substr. CH1

56.485

98.219

0.555
  comA/nlmT Streptococcus mutans UA159

54.571

98.904

0.54

Multiple sequence alignment