Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   STN4L_RS03300 Genome accession   NZ_LS974444
Coordinates   629063..629737 (-) Length   224 a.a.
NCBI ID   WP_113870373.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain N4L     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 624063..634737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STN4L_RS03265 (STN4L_00768) - 624222..624458 (-) 237 Protein_624 ABC transporter permease -
  STN4L_RS03270 (STN4L_00769) - 624581..625792 (-) 1212 WP_014621445.1 ISL3 family transposase -
  STN4L_RS10360 - 627654..629073 (-) 1420 Protein_627 sensor histidine kinase -
  STN4L_RS03300 (STN4L_00777) ciaR 629063..629737 (-) 675 WP_113870373.1 response regulator transcription factor Regulator
  STN4L_RS03305 (STN4L_00778) - 629924..631594 (-) 1671 WP_113870374.1 formate--tetrahydrofolate ligase -
  STN4L_RS03310 (STN4L_00779) - 631788..632471 (+) 684 WP_002948206.1 phosphopantothenate--cysteine ligase -
  STN4L_RS03315 (STN4L_00780) coaC 632464..633009 (+) 546 WP_014608202.1 phosphopantothenoylcysteine decarboxylase -
  STN4L_RS03320 (STN4L_00781) - 633037..633609 (+) 573 WP_011681047.1 ECF transporter S component -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25418.05 Da        Isoelectric Point: 4.2405

>NTDB_id=1143022 STN4L_RS03300 WP_113870373.1 629063..629737(-) (ciaR) [Streptococcus thermophilus strain N4L]
MIKILLVEDDLSLSNSVFDFLDDFADVMQVFDGDEGLYEAESGVYDLILLDLMLPEKDGFTVLKELREQGITTPILIMTA
KESLDDKGHGFELGADDYLTKPFYLKELKMRIEALLKRSGKFDQNTFSFGDVCVNLSTNSTYVGDKEVELLGKEFDLLVY
FLQNQNVILPKSQIFDRLWGFDSDTNVSVVEVYVSKIRKKLKGTDFATNLQTLRSVGYILKNAD

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1143022 STN4L_RS03300 WP_113870373.1 629063..629737(-) (ciaR) [Streptococcus thermophilus strain N4L]
ATGATTAAAATTTTACTAGTAGAAGATGATTTGAGTTTGTCGAACTCAGTTTTTGATTTTTTAGATGACTTTGCGGATGT
GATGCAAGTATTTGATGGAGATGAAGGTCTTTACGAAGCTGAAAGTGGTGTTTATGATTTGATTCTTTTGGACTTAATGT
TACCTGAAAAAGATGGTTTTACAGTTCTTAAAGAATTGCGTGAACAAGGAATAACGACTCCTATTCTTATCATGACTGCT
AAGGAAAGTCTAGACGATAAGGGGCATGGCTTCGAACTCGGAGCTGATGATTATCTAACCAAGCCTTTCTATTTAAAAGA
ATTGAAGATGCGTATTGAGGCACTTTTGAAACGTTCTGGTAAATTTGATCAAAATACTTTTTCTTTTGGAGATGTTTGTG
TCAACCTTTCTACAAATTCAACTTATGTGGGTGATAAAGAAGTAGAACTTCTTGGTAAAGAATTTGATTTATTAGTCTAC
TTCCTACAAAATCAAAACGTTATTTTGCCCAAGTCGCAAATCTTTGATCGTCTTTGGGGATTTGATAGTGATACCAATGT
CTCTGTTGTTGAAGTTTATGTTTCGAAAATTCGTAAGAAACTTAAGGGGACTGATTTTGCTACCAACCTACAAACCTTAA
GAAGTGTGGGGTATATTTTGAAGAATGCTGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

86.099

99.554

0.857
  ciaR Streptococcus pneumoniae D39

86.099

99.554

0.857
  ciaR Streptococcus pneumoniae R6

86.099

99.554

0.857
  ciaR Streptococcus pneumoniae TIGR4

86.099

99.554

0.857
  ciaR Streptococcus mutans UA159

84.375

100

0.844
  vicR Streptococcus mutans UA159

35.593

100

0.375
  covR Lactococcus lactis subsp. lactis strain DGCC12653

37.333

100

0.375
  micA Streptococcus pneumoniae Cp1015

35.169

100

0.371

Multiple sequence alignment