Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   DQL00_RS11305 Genome accession   NZ_LS483523
Coordinates   2119429..2120166 (-) Length   245 a.a.
NCBI ID   WP_001219147.1    Uniprot ID   B1IA60
Organism   Streptococcus pneumoniae strain 4041STDY6836169     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2114429..2125166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL00_RS11285 comA/nlmT 2114806..2116449 (+) 1644 WP_075575712.1 peptide cleavage/export ABC transporter Regulator
  DQL00_RS11290 - 2116460..2117821 (+) 1362 Protein_2098 bacteriocin secretion accessory protein -
  DQL00_RS11295 blpC 2117878..2118033 (+) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  DQL00_RS11300 - 2118075..2119415 (-) 1341 WP_001028044.1 sensor histidine kinase -
  DQL00_RS11305 comE/blpR 2119429..2120166 (-) 738 WP_001219147.1 response regulator transcription factor Regulator
  DQL00_RS11310 - 2120171..2120509 (-) 339 WP_000876676.1 LytTR family DNA-binding domain-containing protein -
  DQL00_RS11315 - 2120785..2121114 (+) 330 WP_000132572.1 hypothetical protein -
  DQL00_RS11325 - 2121282..2122331 (-) 1050 WP_023396177.1 ABC transporter permease -
  DQL00_RS11330 pptA 2122328..2123059 (-) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  DQL00_RS11335 - 2123127..2123537 (+) 411 WP_001278301.1 HIT family protein -
  DQL00_RS11340 - 2123547..2123834 (+) 288 WP_000777760.1 hypothetical protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28828.93 Da        Isoelectric Point: 6.0454

>NTDB_id=1142993 DQL00_RS11305 WP_001219147.1 2119429..2120166(-) (comE/blpR) [Streptococcus pneumoniae strain 4041STDY6836169]
MRIFVLEDDFSQQTRIETTIEKLLKEHHITPSSFEVFGKPDQLLAEVHEKGAHQLFFLDIEIRNEEMKGLEVARKIREQD
PYALIVFVTTHSEFMPLSFRYQVSALDYIDKALSTEEFESRIETALLYANSQDSKSLAEDCFYFKSKFAQFQYPFKEVYY
LETSPRPHRVILYTKTDRLEFTASLEEVFKQEPRLLQCHRSFLINPANVVHLDKKEKLLFFPNGGSCLIARYKVREVSEA
INNLH

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1142993 DQL00_RS11305 WP_001219147.1 2119429..2120166(-) (comE/blpR) [Streptococcus pneumoniae strain 4041STDY6836169]
ATGAGAATATTTGTTTTAGAGGATGATTTTTCCCAACAGACTAGGATTGAAACGACGATTGAGAAACTCTTGAAGGAACA
TCATATCACTCCCAGCTCTTTTGAGGTATTTGGCAAGCCAGACCAACTGCTGGCAGAGGTGCATGAGAAGGGGGCCCATC
AGCTATTCTTTTTGGATATTGAGATTCGAAATGAGGAGATGAAGGGGCTGGAAGTGGCTAGAAAGATTCGGGAACAAGAC
CCCTATGCCCTGATTGTCTTTGTGACGACTCACTCGGAGTTTATGCCCCTGTCCTTTCGCTACCAAGTGTCTGCTCTGGA
CTATATTGATAAGGCCCTTTCGACAGAGGAGTTTGAATCTCGAATCGAGACAGCCCTCCTCTATGCCAATAGTCAAGATA
GTAAAAGTCTGGCGGAAGATTGCTTTTACTTTAAATCAAAATTTGCCCAATTTCAGTATCCTTTTAAAGAGGTTTACTAT
CTCGAAACATCCCCAAGACCCCATCGTGTTATTCTCTATACCAAGACAGACAGGCTGGAATTTACAGCGAGTTTAGAGGA
GGTTTTCAAGCAGGAACCCCGTCTCTTGCAGTGCCATCGCTCTTTTCTCATCAATCCTGCAAATGTGGTGCATTTGGATA
AGAAAGAAAAACTCCTTTTCTTTCCCAATGGTGGAAGTTGTCTGATCGCGCGTTATAAGGTCAGGGAAGTGTCTGAGGCT
ATTAATAACTTACACTGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-241)

Response regulator receiver domain (Response_reg)

(3-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1IA60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

54.321

99.184

0.539
  comE/comE1 Streptococcus equinus JB1

43.882

96.735

0.424
  comE/comE2 Streptococcus equinus JB1

38.843

98.776

0.384
  comE Streptococcus infantis strain Atu-4

36.179

100

0.363

Multiple sequence alignment