Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQL00_RS11330 Genome accession   NZ_LS483523
Coordinates   2122328..2123059 (-) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae strain 4041STDY6836169     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2117328..2128059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL00_RS11295 blpC 2117878..2118033 (+) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  DQL00_RS11300 - 2118075..2119415 (-) 1341 WP_001028044.1 sensor histidine kinase -
  DQL00_RS11305 comE/blpR 2119429..2120166 (-) 738 WP_001219147.1 response regulator transcription factor Regulator
  DQL00_RS11310 - 2120171..2120509 (-) 339 WP_000876676.1 LytTR family DNA-binding domain-containing protein -
  DQL00_RS11315 - 2120785..2121114 (+) 330 WP_000132572.1 hypothetical protein -
  DQL00_RS11325 - 2121282..2122331 (-) 1050 WP_023396177.1 ABC transporter permease -
  DQL00_RS11330 pptA 2122328..2123059 (-) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  DQL00_RS11335 - 2123127..2123537 (+) 411 WP_001278301.1 HIT family protein -
  DQL00_RS11340 - 2123547..2123834 (+) 288 WP_000777760.1 hypothetical protein -
  DQL00_RS11345 dnaJ 2124156..2125292 (-) 1137 WP_001066301.1 molecular chaperone DnaJ -
  DQL00_RS11350 - 2125694..2126050 (-) 357 WP_000114422.1 hypothetical protein -
  DQL00_RS11355 dnaK 2126052..2127875 (-) 1824 WP_000034662.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=1142994 DQL00_RS11330 WP_000889919.1 2122328..2123059(-) (pptA) [Streptococcus pneumoniae strain 4041STDY6836169]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1142994 DQL00_RS11330 WP_000889919.1 2122328..2123059(-) (pptA) [Streptococcus pneumoniae strain 4041STDY6836169]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTAGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment