Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DQL22_RS00385 Genome accession   NZ_LS483485
Coordinates   79816..80142 (-) Length   108 a.a.
NCBI ID   WP_005705031.1    Uniprot ID   A0A0K1N2K6
Organism   Aggregatibacter aphrophilus strain NCTC11096     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 74816..85142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL22_RS00360 (NCTC11096_00073) serA 75549..76781 (-) 1233 WP_109842970.1 phosphoglycerate dehydrogenase -
  DQL22_RS00365 (NCTC11096_00074) rpiA 76805..77461 (-) 657 WP_005701681.1 ribose-5-phosphate isomerase RpiA -
  DQL22_RS00370 (NCTC11096_00075) hemW 77575..78729 (-) 1155 WP_111300636.1 radical SAM family heme chaperone HemW -
  DQL22_RS00375 (NCTC11096_00076) - 78743..79066 (-) 324 WP_005705034.1 YbjQ family protein -
  DQL22_RS00380 (NCTC11096_00077) rdgB 79107..79706 (-) 600 WP_109842972.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  DQL22_RS00385 (NCTC11096_00078) comE1/comEA 79816..80142 (-) 327 WP_005705031.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQL22_RS00390 (NCTC11096_00079) ispH 80429..81373 (-) 945 WP_109842973.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DQL22_RS00395 (NCTC11096_00080) lspA 81373..81867 (-) 495 WP_111711155.1 signal peptidase II -
  DQL22_RS00400 (NCTC11096_00081) ileS 81953..84775 (-) 2823 WP_111300632.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11432.17 Da        Isoelectric Point: 9.6912

>NTDB_id=1142581 DQL22_RS00385 WP_005705031.1 79816..80142(-) (comE1/comEA) [Aggregatibacter aphrophilus strain NCTC11096]
MKAMKHLLATAFVFGSVFAGSAVAAEKTAEPVQLEQPAVQNSVGDKVNINTATAAEIQKALVGIGAKKAEAVVQYREKHG
NFSAVEQLLEVQGIGKATLEKNRDRIAL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1142581 DQL22_RS00385 WP_005705031.1 79816..80142(-) (comE1/comEA) [Aggregatibacter aphrophilus strain NCTC11096]
ATGAAAGCAATGAAGCATCTTTTAGCCACCGCTTTTGTGTTCGGTTCGGTGTTTGCAGGTTCTGCGGTTGCCGCAGAAAA
AACGGCTGAGCCGGTACAACTTGAACAACCGGCGGTGCAAAACAGTGTTGGTGATAAAGTGAATATTAACACCGCTACAG
CAGCAGAAATTCAGAAAGCGCTTGTAGGCATTGGTGCGAAAAAAGCGGAGGCGGTTGTGCAATATCGTGAAAAACACGGT
AATTTCAGCGCAGTGGAACAATTATTGGAAGTACAGGGGATTGGTAAAGCGACATTAGAGAAGAATCGCGATCGTATCGC
ATTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(45-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K1N2K6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

61.947

100

0.648
  comEA/comE1 Glaesserella parasuis strain SC1401

54.867

100

0.574
  comEA Vibrio parahaemolyticus RIMD 2210633

42.857

97.222

0.417
  comEA Vibrio cholerae C6706

47.619

77.778

0.37
  comEA Vibrio cholerae strain A1552

47.619

77.778

0.37
  comEA Acinetobacter baylyi ADP1

52

69.444

0.361

Multiple sequence alignment