Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DQL19_RS08965 Genome accession   NZ_LS483480
Coordinates   1758455..1759984 (+) Length   509 a.a.
NCBI ID   WP_077643759.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC13377     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1753455..1764984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL19_RS08940 (NCTC13377_01761) oppC 1753801..1754736 (+) 936 WP_005661282.1 oligopeptide ABC transporter permease OppC -
  DQL19_RS08945 (NCTC13377_01762) - 1754746..1755717 (+) 972 WP_005647625.1 ABC transporter ATP-binding protein -
  DQL19_RS08950 (NCTC13377_01763) oppF 1755714..1756712 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  DQL19_RS08955 (NCTC13377_01764) - 1756752..1757618 (-) 867 WP_021034921.1 VirK/YbjX family protein -
  DQL19_RS08960 (NCTC13377_01765) yihA 1757723..1758340 (+) 618 WP_077643760.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DQL19_RS08965 (NCTC13377_01766) comM 1758455..1759984 (+) 1530 WP_077643759.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DQL19_RS08970 (NCTC13377_01767) deoC 1760018..1760689 (-) 672 WP_077643758.1 deoxyribose-phosphate aldolase -
  DQL19_RS08975 (NCTC13377_01768) - 1760800..1761303 (+) 504 WP_005651783.1 protein disulfide oxidoreductase -
  DQL19_RS08980 (NCTC13377_01769) rfaD 1761356..1762282 (+) 927 WP_015702067.1 ADP-glyceromanno-heptose 6-epimerase -
  DQL19_RS08985 (NCTC13377_01770) xylB 1762333..1763814 (-) 1482 WP_040034663.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55830.25 Da        Isoelectric Point: 9.6620

>NTDB_id=1142500 DQL19_RS08965 WP_077643759.1 1758455..1759984(+) (comM) [Haemophilus influenzae strain NCTC13377]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASHLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLSDKDAFFLENALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1142500 DQL19_RS08965 WP_077643759.1 1758455..1759984(+) (comM) [Haemophilus influenzae strain NCTC13377]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCGCTAGTCACTATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATTGCTATCGGGATTTTAGCTGCATCGGATCAGCTTGATGCGAGCCACTTAAAGCAATTTGAATTTGT
GGCTGAGCTTGCGCTAACGGGACAATTGCGTGGCGTACATGGTGTGATCCCCGCTATTCTTGCAGCACAAAAGTCAAAGC
GAGAGTTAATTATTGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACGCTT
TTAGATGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCACTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATCGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGGAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTGCCT
GAGATGACAGATTTAGAAGCGATAGAAACAGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
GCAACGTCCTTTTCGCGCACCACATCATAGTGCATCAATGCCAGCTTTAGTTGGTGGTGGGACGATCCCTAAACCTGGCG
AAATATCCTTAGCAACAAATGGGGTACTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCACTACGT
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCCAATGCCAAAATTCAATTTCCAGCTCGTTTTCAATTAGTCGC
AGCGATGAATCCAAGCCCCACAGGTCATTATACTGGAACACATAACCGCACTTCACCCCAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGATTTGTCTATTGAAGTGCCTTTATTGCCACAAGGCAGCTTACAAAAT
ACGGGCGATCGTGGTGAAACTAGCGCACAAGTACGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCGGG
AAAAATTAACGCTTATTTGAATAGTAAAGAGATTGAGCGTGATTGCAAGTTAAGTGATAAAGATGCCTTTTTCCTTGAAA
ATGCGCTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCTGATCTGCAA
GGAGAACAACAAATTTCTCAACCGCACTTAGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.214

100

0.992
  comM Glaesserella parasuis strain SC1401

79.29

99.607

0.79
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

66.272

99.607

0.66
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.184

100

0.477

Multiple sequence alignment