Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | DQL19_RS03155 | Genome accession | NZ_LS483480 |
| Coordinates | 610613..611026 (+) | Length | 137 a.a. |
| NCBI ID | WP_015701647.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain NCTC13377 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 605613..616026
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL19_RS03135 (NCTC13377_00612) | - | 606101..608695 (-) | 2595 | WP_077643690.1 | penicillin-binding protein 1A | - |
| DQL19_RS03140 (NCTC13377_00613) | comA | 608794..609591 (+) | 798 | WP_005693722.1 | competence protein A | Machinery gene |
| DQL19_RS03145 (NCTC13377_00614) | comB | 609592..610098 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| DQL19_RS03150 (NCTC13377_00615) | comC | 610095..610616 (+) | 522 | WP_077643691.1 | competence protein ComC | Machinery gene |
| DQL19_RS03155 (NCTC13377_00616) | comD | 610613..611026 (+) | 414 | WP_015701647.1 | pilus assembly protein PilP | Machinery gene |
| DQL19_RS03160 (NCTC13377_00617) | comE | 611036..612373 (+) | 1338 | WP_015701646.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| DQL19_RS03165 (NCTC13377_00618) | - | 612386..613072 (+) | 687 | WP_015701645.1 | ComF family protein | - |
| DQL19_RS03170 (NCTC13377_00619) | nfuA | 613148..613744 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| DQL19_RS03175 (NCTC13377_00620) | nudC | 613811..614605 (+) | 795 | WP_015701644.1 | NAD(+) diphosphatase | - |
| DQL19_RS03180 (NCTC13377_00621) | - | 614641..615231 (+) | 591 | WP_015701643.1 | YjaG family protein | - |
| DQL19_RS03185 (NCTC13377_00622) | - | 615371..615643 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15707.91 Da Isoelectric Point: 4.5625
>NTDB_id=1142485 DQL19_RS03155 WP_015701647.1 610613..611026(+) (comD) [Haemophilus influenzae strain NCTC13377]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKVVGVVISKD
KAFALLQDQGLQIYIVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKVVGVVISKD
KAFALLQDQGLQIYIVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1142485 DQL19_RS03155 WP_015701647.1 610613..611026(+) (comD) [Haemophilus influenzae strain NCTC13377]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAAGTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACATTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAAGTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACATTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
98.54 |
100 |
0.985 |
| comD | Haemophilus influenzae Rd KW20 |
97.81 |
100 |
0.978 |