Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   DQL19_RS03150 Genome accession   NZ_LS483480
Coordinates   610095..610616 (+) Length   173 a.a.
NCBI ID   WP_077643691.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC13377     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 605095..615616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL19_RS03130 (NCTC13377_00611) - 605179..606024 (-) 846 WP_015701650.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DQL19_RS03135 (NCTC13377_00612) - 606101..608695 (-) 2595 WP_077643690.1 penicillin-binding protein 1A -
  DQL19_RS03140 (NCTC13377_00613) comA 608794..609591 (+) 798 WP_005693722.1 competence protein A Machinery gene
  DQL19_RS03145 (NCTC13377_00614) comB 609592..610098 (+) 507 WP_011272049.1 competence protein ComB Machinery gene
  DQL19_RS03150 (NCTC13377_00615) comC 610095..610616 (+) 522 WP_077643691.1 competence protein ComC Machinery gene
  DQL19_RS03155 (NCTC13377_00616) comD 610613..611026 (+) 414 WP_015701647.1 pilus assembly protein PilP Machinery gene
  DQL19_RS03160 (NCTC13377_00617) comE 611036..612373 (+) 1338 WP_015701646.1 type IV pilus secretin PilQ family protein Machinery gene
  DQL19_RS03165 (NCTC13377_00618) - 612386..613072 (+) 687 WP_015701645.1 ComF family protein -
  DQL19_RS03170 (NCTC13377_00619) nfuA 613148..613744 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  DQL19_RS03175 (NCTC13377_00620) nudC 613811..614605 (+) 795 WP_015701644.1 NAD(+) diphosphatase -
  DQL19_RS03180 (NCTC13377_00621) - 614641..615231 (+) 591 WP_015701643.1 YjaG family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19996.19 Da        Isoelectric Point: 9.7515

>NTDB_id=1142484 DQL19_RS03150 WP_077643691.1 610095..610616(+) (comC) [Haemophilus influenzae strain NCTC13377]
MKAFFNDPFTPFGKWLSQPFYVHGLTFLLLLSAVIFRPVLDYIEASTRFDETEYELAKKSSELLHQQKILTSLQQQSESR
KLSPELAAQIIPLNKQIQRLAARNGLSQHLRWEMGQKPILHLQLTGHFEKTKTFLTALLANSLQLSVSRLQFIKPEDSPL
QTEIIFQLDKETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1142484 DQL19_RS03150 WP_077643691.1 610095..610616(+) (comC) [Haemophilus influenzae strain NCTC13377]
ATGAAAGCTTTTTTTAACGATCCTTTTACTCCTTTTGGAAAATGGCTAAGCCAGCCTTTTTATGTGCACGGTTTAACCTT
TTTATTGCTATTAAGTGCGGTGATTTTTCGCCCCGTTTTAGATTATATAGAGGCTAGCACGCGTTTTGATGAAACTGAGT
ATGAATTAGCTAAAAAAAGTTCAGAATTGTTGCATCAACAGAAAATTTTAACCTCTTTACAACAGCAATCGGAAAGTCGA
AAACTTTCTCCAGAACTGGCTGCACAAATTATTCCTTTGAATAAACAAATTCAACGTTTAGCTGCACGCAACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAAAAGCCTATTTTGCATTTACAGCTTACAGGTCATTTTGAGAAAACGAAGACAT
TTTTAACCGCACTTTTGGCTAATTCGTTACAGCTTTCAGTGAGTCGCTTGCAGTTTATCAAACCAGAAGACAGCCCGTTG
CAAACCGAGATTATTTTTCAGCTAGATAAGGAAACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

94.798

100

0.948
  comC Haemophilus influenzae Rd KW20

93.642

100

0.936

Multiple sequence alignment