Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DQL19_RS03140 Genome accession   NZ_LS483480
Coordinates   608794..609591 (+) Length   265 a.a.
NCBI ID   WP_005693722.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC13377     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 603794..614591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL19_RS03120 (NCTC13377_00609) recR 603962..604564 (-) 603 WP_005626527.1 recombination mediator RecR -
  DQL19_RS03125 (NCTC13377_00610) - 604697..605026 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  DQL19_RS03130 (NCTC13377_00611) - 605179..606024 (-) 846 WP_015701650.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DQL19_RS03135 (NCTC13377_00612) - 606101..608695 (-) 2595 WP_077643690.1 penicillin-binding protein 1A -
  DQL19_RS03140 (NCTC13377_00613) comA 608794..609591 (+) 798 WP_005693722.1 competence protein A Machinery gene
  DQL19_RS03145 (NCTC13377_00614) comB 609592..610098 (+) 507 WP_011272049.1 competence protein ComB Machinery gene
  DQL19_RS03150 (NCTC13377_00615) comC 610095..610616 (+) 522 WP_077643691.1 competence protein ComC Machinery gene
  DQL19_RS03155 (NCTC13377_00616) comD 610613..611026 (+) 414 WP_015701647.1 pilus assembly protein PilP Machinery gene
  DQL19_RS03160 (NCTC13377_00617) comE 611036..612373 (+) 1338 WP_015701646.1 type IV pilus secretin PilQ family protein Machinery gene
  DQL19_RS03165 (NCTC13377_00618) - 612386..613072 (+) 687 WP_015701645.1 ComF family protein -
  DQL19_RS03170 (NCTC13377_00619) nfuA 613148..613744 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31541.85 Da        Isoelectric Point: 5.9495

>NTDB_id=1142482 DQL19_RS03140 WP_005693722.1 608794..609591(+) (comA) [Haemophilus influenzae strain NCTC13377]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSSAQTYLQDFQPFNINILDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=1142482 DQL19_RS03140 WP_005693722.1 608794..609591(+) (comA) [Haemophilus influenzae strain NCTC13377]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
GCGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAATATTAATATATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACGCCATTACCAGAAAACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

100

100

1
  comA Haemophilus influenzae 86-028NP

96.226

100

0.962

Multiple sequence alignment