Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   DQN71_RS02935 Genome accession   NZ_LS483471
Coordinates   562986..563687 (+) Length   233 a.a.
NCBI ID   WP_015605198.1    Uniprot ID   -
Organism   Streptococcus cristatus strain NCTC13807     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 557986..568687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN71_RS02910 (NCTC13807_00564) - 559025..559867 (+) 843 WP_015605203.1 metallophosphoesterase family protein -
  DQN71_RS02920 (NCTC13807_00565) - 560367..560816 (+) 450 WP_015605201.1 Rrf2 family transcriptional regulator -
  DQN71_RS02925 (NCTC13807_00566) - 561086..561565 (+) 480 WP_041826807.1 hypothetical protein -
  DQN71_RS02930 (NCTC13807_00567) - 561641..562723 (-) 1083 WP_015605199.1 M24 family metallopeptidase -
  DQN71_RS02935 (NCTC13807_00568) micA 562986..563687 (+) 702 WP_015605198.1 response regulator YycF Regulator
  DQN71_RS02940 (NCTC13807_00569) micB 563680..565044 (+) 1365 WP_015605197.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQN71_RS02945 (NCTC13807_00570) vicX 565037..565837 (+) 801 WP_015605196.1 MBL fold metallo-hydrolase Regulator
  DQN71_RS02955 (NCTC13807_00571) - 566149..566508 (+) 360 WP_015605195.1 YbaN family protein -
  DQN71_RS02960 (NCTC13807_00572) rnc 566654..567343 (+) 690 WP_045501072.1 ribonuclease III -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26832.82 Da        Isoelectric Point: 4.8934

>NTDB_id=1142306 DQN71_RS02935 WP_015605198.1 562986..563687(+) (micA) [Streptococcus cristatus strain NCTC13807]
MKKILVVDDEKPISDIIKFNMTKEGYEVLTAFDGKEALEMFEVEQPDILILDLMLPEVDGLDVARTIRKTSNVPIIVLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRRSELIPDSHVDESSPKELFIGDLQILPDAFVVKKHGKELELTH
REFELLHHLATHVGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYIRNND

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1142306 DQN71_RS02935 WP_015605198.1 562986..563687(+) (micA) [Streptococcus cristatus strain NCTC13807]
ATGAAAAAAATATTAGTTGTAGATGACGAGAAGCCAATCTCGGACATTATAAAGTTTAATATGACCAAGGAAGGTTATGA
AGTGCTGACTGCCTTTGATGGTAAGGAAGCCTTGGAAATGTTTGAAGTGGAGCAACCAGACATCTTGATTCTGGACTTGA
TGTTGCCAGAAGTGGATGGACTTGATGTTGCTCGGACCATTCGTAAGACCAGCAATGTTCCAATCATTGTGCTTTCGGCC
AAAGATAGCGAGTTCGATAAGGTAATCGGTCTGGAAATCGGTGCTGATGACTATGTGACCAAGCCCTTTTCAAATCGTGA
ATTGCTGGCTCGGGTCAAGGCCTTGCTGCGCCGTTCTGAACTCATCCCAGATAGTCATGTGGATGAGAGTAGTCCAAAGG
AATTGTTTATTGGAGATTTGCAGATTCTTCCAGATGCTTTTGTGGTGAAAAAACACGGGAAAGAATTGGAATTAACCCAT
CGTGAATTTGAACTCTTGCACCATTTGGCGACCCATGTCGGTCAAGTCATGACACGTGAACACTTACTAGAAACGGTCTG
GGGTTATGATTACTTCGGTGATGTGCGGACTGTTGATGTGACCATTCGTCGTCTGCGCGAAAAAATCGAAGATACTCCAA
GCCGTCCAGAGTACATCTTGACTCGCCGCGGTGTCGGTTATTACATAAGAAATAATGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-228)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

81.974

100

0.82
  vicR Streptococcus mutans UA159

79.149

100

0.798
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.978

98.283

0.442
  covR Streptococcus salivarius strain HSISS4

42.795

98.283

0.421
  scnR Streptococcus mutans UA159

36.957

98.712

0.365

Multiple sequence alignment