Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQN71_RS02945 Genome accession   NZ_LS483471
Coordinates   565037..565837 (+) Length   266 a.a.
NCBI ID   WP_015605196.1    Uniprot ID   -
Organism   Streptococcus cristatus strain NCTC13807     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 560037..570837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN71_RS02920 (NCTC13807_00565) - 560367..560816 (+) 450 WP_015605201.1 Rrf2 family transcriptional regulator -
  DQN71_RS02925 (NCTC13807_00566) - 561086..561565 (+) 480 WP_041826807.1 hypothetical protein -
  DQN71_RS02930 (NCTC13807_00567) - 561641..562723 (-) 1083 WP_015605199.1 M24 family metallopeptidase -
  DQN71_RS02935 (NCTC13807_00568) micA 562986..563687 (+) 702 WP_015605198.1 response regulator YycF Regulator
  DQN71_RS02940 (NCTC13807_00569) micB 563680..565044 (+) 1365 WP_015605197.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQN71_RS02945 (NCTC13807_00570) vicX 565037..565837 (+) 801 WP_015605196.1 MBL fold metallo-hydrolase Regulator
  DQN71_RS02955 (NCTC13807_00571) - 566149..566508 (+) 360 WP_015605195.1 YbaN family protein -
  DQN71_RS02960 (NCTC13807_00572) rnc 566654..567343 (+) 690 WP_045501072.1 ribonuclease III -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29774.78 Da        Isoelectric Point: 5.9437

>NTDB_id=1142308 DQN71_RS02945 WP_015605196.1 565037..565837(+) (vicX) [Streptococcus cristatus strain NCTC13807]
MTKGFQYSILASGSSGNCFYLETDQKRLLVDAGLSGKKITSLLSEIDRKPEDLDAILVTHEHKDHIHGVGVLARKYNLDI
YANEATWRAMEKDLGKLDASQKHIFEMGKMKTFGDLDVESFGVSHDAAAPQFYRFMKDGKSFVMLTDTGYVSDRMAGVIE
NADAYLIESNHDIEILRSGAYPWSLKQRILSDLGHLSNEDGAETMIRTLGNRTKRIYLGHLSKENNIKELAHMTMVNQLA
QADLPVGHDFQVFDTFPDTATPLVTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1142308 DQN71_RS02945 WP_015605196.1 565037..565837(+) (vicX) [Streptococcus cristatus strain NCTC13807]
ATGACTAAGGGATTTCAATATAGTATTCTAGCATCGGGATCGAGCGGCAATTGCTTTTATCTGGAAACAGACCAAAAACG
CCTGCTTGTCGATGCTGGTCTATCAGGGAAAAAGATTACGAGCCTTTTAAGCGAAATCGACCGCAAACCAGAGGATTTAG
ATGCTATTTTGGTCACCCATGAGCACAAGGATCACATCCATGGTGTAGGGGTCTTGGCGCGTAAGTACAATCTAGATATT
TATGCCAACGAAGCAACCTGGCGAGCGATGGAAAAGGACTTGGGCAAGCTGGATGCCAGTCAGAAGCATATCTTTGAAAT
GGGTAAAATGAAGACTTTTGGCGATTTAGATGTCGAAAGTTTTGGGGTTAGCCACGATGCGGCTGCTCCCCAGTTTTATC
GTTTTATGAAGGATGGCAAGAGCTTTGTCATGCTGACGGATACGGGTTATGTTAGTGACCGCATGGCCGGAGTGATTGAG
AATGCGGATGCTTATTTGATTGAGAGCAATCATGATATCGAGATTCTCCGGAGCGGTGCCTACCCGTGGAGCCTGAAACA
GCGCATCCTGTCTGACTTGGGACATTTATCCAATGAAGATGGTGCGGAAACCATGATTCGCACCCTTGGCAATCGCACCA
AGCGCATCTATCTGGGGCATTTGAGTAAGGAAAATAATATCAAGGAGCTGGCTCATATGACCATGGTCAATCAACTGGCT
CAAGCTGACTTGCCAGTAGGTCATGATTTTCAGGTCTTTGATACTTTTCCTGATACAGCGACGCCTTTGGTAACTATCTA
A

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

79.848

98.872

0.789

Multiple sequence alignment